Package: wnpp Severity: wishlist Subject: ITP: preseq -- determine redundancy in RNAseq experiments Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : preseq Version : 3.0.2 Upstream Author : Timothy Daley * URL : http://smithlabresearch.org/software/preseq/ * License : GPL-3.0+ Programming Lang: C++ Description : determine redundancy in RNAseq experiments The preseq package is aimed at predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth and how many will be expected from additional sequencing using an initial sequencing experiment. The estimates can then be used to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples. . Preseq package also predicts the genomic coverage for single-cell DNA sequencing experiments with the more recently added gc_extrap functionality. Remark: This package is maintained by Steffen Moeller at https://salsa.debian.org/med-team/preseq
