Package: openjdk-14-jdk-headless Version: 14.0.2+12-1 Severity: normal Hi! I'm pretty much a newbie to java, so don't understand anything about the cause of this error. I'm trying to build QuPath from source (see instructions at https://qupath.readthedocs.io/en/latest/docs/reference/building.html), but the build is failing at the jlink step. It works fine on a different operating system (macOS), so it seems to be something strange with this particular openjdk package. Below is the terminal output (where I have replace the path with QUPATHDIR); the failure appears to have happened in the jlink command, which gives the error message:
Error: Hash of jdk.management.jfr (fe13cbaad9132f3aafe8db1febd951ded02ac6f6371c0b1b14fc4fc561ce3b70) differs to expected hash (8f4b914f856e98e19ec589e7c679b7ce7774a3985aa3c0ec79e5f831e0c3eec1) recorded in java.base Best wishes, Julian >>>>> begin session erdos (master) $ ./gradlew clean build createPackage > Configure project : Building QuPath version 0.2.3-SNAPSHOT Current Java version: 14 /usr/lib/jvm/java-14-openjdk-amd64 I won't try to get the last commit - consider running with '-Prequest-git-tag=true' if you want this next time (assuming Git is installed) Operating system: Linux 5.7.0-2-amd64 amd64 Use -Ptensorflow-cpu=true or -Ptensorflow-gpu=true if you wish to include experimental TensorFlow module Excluding project ':qupath-extension-tensorflow' Copying license directories: QUPATHDIR/qupath-core/src/main/resources/licenses QUPATHDIR/qupath-core-processing/src/main/resources/licenses QUPATHDIR/qupath-extension-bioformats/src/main/resources/licenses QUPATHDIR/qupath-extension-openslide/src/main/resources/licenses QUPATHDIR/qupath-extension-pen/src/main/resources/licenses QUPATHDIR/qupath-extension-processing/src/main/resources/licenses QUPATHDIR/qupath-extension-script-editor/src/main/resources/licenses QUPATHDIR/qupath-extension-svg/src/main/resources/licenses QUPATHDIR/qupath-gui-fx/src/main/resources/licenses Extracting native libraries from QUPATHDIR/maven/repo/org/openslide/openslide/3.4.1_2/openslide-3.4.1_2-natives-linux.jar into build/qupath Extracting native libraries from QUPATHDIR/maven/repo/net/sourceforge/jpen/jpen/2-150301/jpen-2-150301-natives-linux.jar into build/qupath LICENSE PATH: QUPATHDIR/license-unknown.txt > Task :qupath-core:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :qupath-core-processing:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: QUPATHDIR/qupath-core-processing/src/main/java/qupath/opencv/ml/OpenCVDNN.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :qupath-gui-fx:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :qupath-extension-processing:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. > Task :qupath-experimental:compileJava Note: QUPATHDIR/qupath-experimental/src/main/java/qupath/lib/gui/align/ImageAlignmentPane.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. > Task :qupath-core:compileTestJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: QUPATHDIR/qupath-core/src/test/java/qupath/lib/io/TypeAdaptersCVTest.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :qupath-core-processing:compileTestJava Note: QUPATHDIR/qupath-core-processing/src/test/java/qupath/opencv/tools/OpenCVToolsTest.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :createRuntime FAILED Creating default Java runtime /usr/lib/jvm/java-14-openjdk-amd64/bin/jlink --output QUPATHDIR/build/jre --add-modules java.desktop,java.xml,java.scripting,java.sql,java.naming,jdk.unsupported,jdk.zipfs,java.net.http,java.management,jdk.management.agent --bind-services --strip-debug --no-header-files --no-man-pages --strip-native-commands --compress=2Error: Hash of jdk.management.jfr (fe13cbaad9132f3aafe8db1febd951ded02ac6f6371c0b1b14fc4fc561ce3b70) differs to expected hash (8f4b914f856e98e19ec589e7c679b7ce7774a3985aa3c0ec79e5f831e0c3eec1) recorded in java.base FAILURE: Build failed with an exception. * What went wrong: Execution failed for task ':createRuntime'. > Process 'command '/usr/lib/jvm/java-14-openjdk-amd64/bin/jlink'' finished > with non-zero exit value 1 * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/6.5/userguide/command_line_interface.html#sec:command_line_warnings BUILD FAILED in 37s 70 actionable tasks: 70 executed <<<<< end session -- System Information: Debian Release: bullseye/sid APT prefers stretch APT policy: (500, 'stretch'), (500, 'testing'), (500, 'stable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.7.0-2-amd64 (SMP w/4 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) (ignored: LC_ALL set to en_GB.UTF-8), LANGUAGE not set Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages openjdk-14-jdk-headless depends on: ii libc6 2.31-3 ii openjdk-14-jre-headless 14.0.2+12-1 openjdk-14-jdk-headless recommends no packages. Versions of packages openjdk-14-jdk-headless suggests: ii openjdk-14-demo 14.0.2+12-1 pn openjdk-14-source <none> -- no debconf information
