Source: sambamba Version: 0.7.1-4 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200802 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o > sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o > sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o > sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o > sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o > sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o > sambamba.p/sambamba_utils_common_bed.d.o > sambamba.p/sambamba_utils_common_file.d.o > sambamba.p/sambamba_utils_common_filtering.d.o > sambamba.p/sambamba_utils_common_intervaltree.d.o > sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o > sambamba.p/sambamba_utils_common_overwrite.d.o > sambamba.p/sambamba_utils_common_pratt_parser.d.o > sambamba.p/sambamba_utils_common_progressbar.d.o > sambamba.p/sambamba_utils_common_queryparser.d.o > sambamba.p/sambamba_utils_common_readstorage.d.o > sambamba.p/sambamba_utils_common_tmpdir.d.o > sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o > sambamba.p/sambamba_utils_view_headerserializer.d.o > sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o > sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o > sambamba.p/utils_version_.d.o sambamba.p/cram_exception.d.o > sambamba.p/cram_htslib.d.o sambamba.p/cram_reader.d.o > sambamba.p/cram_reference.d.o sambamba.p/cram_slicereader.d.o > sambamba.p/cram_wrappers.d.o sambamba.p/cram_writer.d.o > sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o > sambamba.p/_build_sambamba-s4fhbx_sambamba-0.7.1_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o > -L=--allow-shlib-undefined -link-defaultlib-shared -O -g -release -wi -L=-z > -L=relro -L=/usr/lib/x86_64-linux-gnu/libbiod.a > -L=/usr/lib/x86_64-linux-gnu/libz.a -L=/usr/lib/x86_64-linux-gnu/libhts.a > -L=-z -L=relro -L=-z -L=now -L=-flto -fvisibility=hidden > -L=/usr/lib/x86_64-linux-gnu/libbz2.a > -L=/usr/lib/x86_64-linux-gnu/libdeflate.a -L=-lm -L=-lpthread > -L=/usr/lib/x86_64-linux-gnu/liblzma.a > /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/liblz4.so > /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libcrypto.so > /usr/lib/x86_64-linux-gnu/liblzma.so -L=-rpath > -L=/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu > -L=-rpath-link -L=/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu > -L=-rpath-link -L=/usr/lib/x86_64-linux-gnu > lto1: fatal error: bytecode stream in file > ‘/usr/lib/x86_64-linux-gnu/libhts.a’ generated with GCC compiler older than > 10.0 > compilation terminated. > lto-wrapper: fatal error: /usr/bin/cc returned 1 exit status > compilation terminated. > /usr/bin/ld.gold: fatal error: lto-wrapper failed > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2020/08/02/sambamba_0.7.1-4_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
