Package: wnpp Severity: wishlist Subject: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment Package: wnpp Owner: Antoni Villalonga <ant...@friki.cat> Severity: wishlist
* Package name : pairtools Version : 0.3.0 Upstream Author : Mirny Lab * URL : https://github.com/mirnylab/pairtools * License : MIT Programming Lang: Python Description : Framework to process sequencing data from a Hi-C experiment Simple and fast command-line framework to process sequencing data from a Hi-C experiment. . Process pair-end sequence alignments and perform the following operations: . - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules - Sort .pairs files for downstream analyses - Detect, tag and remove PCR/optical duplicates - Generate extensive statistics of Hi-C datasets - Select Hi-C pairs given flexibly defined criteria - Restore .sam alignments from Hi-C pairs Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/pairtools
