Source: mmseqs2 Version: 11-e1a1c+ds-3 Severity: important Tags: ftbfs patch
https://buildd.debian.org/status/fetch.php?pkg=mmseqs2&arch=i386&ver=11-e1a1c%2Bds-3&stamp=1588613875&raw=0 ... /<<PKGBUILDDIR>>/src/commons/Util.cpp: In static member function ‘static uint64_t Util::revComplement(uint64_t, int)’: /<<PKGBUILDDIR>>/src/commons/Util.cpp:601:17: error: ‘_mm_cvtsi64_si128’ was not declared in this scope; did you mean ‘_mm_cvtsi32_si128’? 601 | __m128i x = _mm_cvtsi64_si128(kmer); | ^~~~~~~~~~~~~~~~~ | _mm_cvtsi32_si128 /<<PKGBUILDDIR>>/src/commons/Util.cpp:638:24: error: ‘_mm_cvtsi128_si64’ was not declared in this scope; did you mean ‘_mm_cvtsi128_si32’? 638 | return (((uint64_t)_mm_cvtsi128_si64(x)) >> (uint64_t)(64-2*k)); | ^~~~~~~~~~~~~~~~~ | _mm_cvtsi128_si32 make[4]: *** [src/CMakeFiles/mmseqs-framework.dir/build.make:573: src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o] Error 1 It makes sense to provide compile with different optimizations for amd64, but for i386 the generic version is good enough (there are unlikely to be many serious users on i386): --- debian/rules.old 2020-05-19 09:28:28.837521336 +0000 +++ debian/rules 2020-05-19 09:28:56.101507374 +0000 @@ -23,13 +23,6 @@ export CXXFLAGS="$(CXXFLAGS) -m$${SIMD}" && export CFLAGS="$(CFLAGS) -m$${SIMD}" && \ dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DVERSION_OVERRIDE=$(DEB_VERSION) ; \ done -else ifeq (i386,$(DEB_HOST_ARCH)) - for SIMD in ssse3 sse3 sse2 ; do \ - export CXXFLAGS="$(CXXFLAGS) -m$${SIMD}" && export CFLAGS="$(CFLAGS) -m$${SIMD}" && \ - dh_auto_configure --builddirectory build_$${SIMD} -- -DEXE_SUFFIX=-$${SIMD} -DVERSION_OVERRIDE=$(DEB_VERSION) ; \ - done - export CXXFLAGS="$(CXXFLAGS)" && export CFLAGS="$(CFLAGS)" && \ - dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DVERSION_OVERRIDE=$(DEB_VERSION) else dh_auto_configure -- -DVERSION_OVERRIDE=$(DEB_VERSION) endif @@ -42,12 +35,6 @@ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_build --builddirectory build_$${SIMD} ; \ done -else ifeq (i386,$(DEB_HOST_ARCH)) - mkdir -p $(binprefix) - for SIMD in ssse3 sse3 sse2 ; do \ - dh_auto_build --builddirectory build_$${SIMD} ; \ - done - dh_auto_build --builddirectory build_plain else dh_auto_build endif @@ -63,16 +50,6 @@ dh_install -pmmseqs2 usr/bin/mmseqs-* usr/bin/ cd $(binprefix) \ && for prog in mmseqs ; do \ - ln -s ../lib/$(DEB_SOURCE)/simd-dispatch $${prog} ; done -else ifeq (i386,$(DEB_HOST_ARCH)) - dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/$(DEB_SOURCE)/ - for SIMD in ssse3 sse3 sse2 ; do \ - dh_auto_install --builddirectory build_$${SIMD} ; \ - done - dh_auto_install --builddirectory build_plain - dh_install -pmmseqs2 usr/bin/mmseqs-* usr/bin/ - cd $(binprefix) \ - && for prog in mmseqs ; do \ ln -s ../lib/$(DEB_SOURCE)/simd-dispatch $${prog} ; done else dh_auto_install
