Package: diamond-aligner Version: 0.9.32-2 Severity: important Dear Maintainer,
I run diamond like this: diamond blastx --threads 2 --outfmt 5 --max-target-seqs 5 --evalue 1e-5 --db /home/marcelo/Diamond_DB/nr --query /home/marcelo/Google\ Drive/Mlaia/NoISeq/ExonID_GDE.fa -o /home/marcelo/Google\ Drive/Mlaia/Blastn/blastx.exons.diamond.xml And I got this error: marcelo@marcelo:~/Google Drive/Mlaia/Blastn$ diamond blastx --outfmt 5 --max- target-seqs 5 --evalue 1e-5 --db /media/marcelo/Seagate\ Expansion\ Drive/NCBI_DB/Diamond/nr --query /home/marcelo/Google\ Drive/Mlaia/NoISeq/ExonID_GDE.fa -o /home/marcelo/Google\ Drive/Mlaia/Blastn/blastx.exons.diamond.xml diamond v0.9.32.133 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org #CPU threads: 4 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /home/marcelo/Google Drive/Mlaia/Blastn Opening the database... [0s] #Target sequences to report alignments for: 5 Reference = /media/marcelo/Seagate Expansion Drive/NCBI_DB/Diamond/nr.dmnd Sequences = 282858011 Letters = 101765175729 Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.046s] Masking queries... diamond: /build/diamond-aligner-jUHUMq/diamond- aligner-0.9.32/src/lib/Eigen/src/Core/DenseCoeffsBase.h:408: Eigen::DenseCoeffsBase<Derived, 1>::Scalar& Eigen::DenseCoeffsBase<Derived, 1>::operator[](Eigen::Index) [with Derived = Eigen::Array<float, -1, 1>; Eigen::DenseCoeffsBase<Derived, 1>::Scalar = float; Eigen::Index = long int]: Assertion `index >= 0 && index < size()' failed. diamond: /build/diamond-aligner-jUHUMq/diamond- aligner-0.9.32/src/lib/Eigen/src/Core/DenseCoeffsBase.h:408: Eigen::DenseCoeffsBase<Derived, 1>::Scalar& Eigen::DenseCoeffsBase<Derived, 1>::operator[](Eigen::Index) [with Derived = Eigen::Array<float, -1, 1>; Eigen::DenseCoeffsBase<Derived, 1>::Scalar = float; Eigen::Index = long int]: Assertion `index >= 0 && index < size()' failed. Abortado marcelo@marcelo:~/Google Drive/Mlaia/Blastn$ I opened a issue on diamond support forum at https://github.com/bbuchfink/diamond/issues/351 Please, could you see that thread? May be this bug is only in the Debian version, because I run the github version 0.32 and it worked out of the box. Thank you. -- System Information: Debian Release: bullseye/sid APT prefers testing APT policy: (990, 'testing'), (500, 'stable'), (250, 'unstable'), (50, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores) Kernel taint flags: TAINT_CRAP, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=pt_BR.UTF-8, LC_CTYPE=pt_BR.UTF-8 (charmap=UTF-8), LANGUAGE=pt_BR:pt:en (charmap=UTF-8) Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages diamond-aligner depends on: ii libc6 2.30-7 ii libgcc-s1 10.1.0-1 ii libstdc++6 10.1.0-1 ii zlib1g 1:1.2.11.dfsg-2 Versions of packages diamond-aligner recommends: ii med-config 3.5.1 diamond-aligner suggests no packages. -- no debconf information
