Source: python-biopython Version: 1.76+dfsg-2 Severity: serious Tags: ftbfs
https://buildd.debian.org/status/package.php?p=python-biopython&suite=sid ... ====================================================================== FAIL: test_fasta_db_nucl (test_NCBI_BLAST_tools.BlastDB) Test makeblastdb wrapper with nucleotide database. ---------------------------------------------------------------------- Traceback (most recent call last): File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 249, in test_fasta_db_nucl self.assertTrue(os.path.isfile("GenBank/NC_005816.fna.nhd")) AssertionError: False is not true ====================================================================== FAIL: test_fasta_db_prot (test_NCBI_BLAST_tools.BlastDB) Test makeblastdb wrapper with protein database. ---------------------------------------------------------------------- Traceback (most recent call last): File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 208, in test_fasta_db_prot self.assertTrue(os.path.isfile("GenBank/NC_005816.faa.phd")) AssertionError: False is not true ---------------------------------------------------------------------- Ran 518 tests in 330.272 seconds FAILED (failures = 1) Skipping any tests requiring internet access Python version: 3.8.3 (default, May 14 2020, 11:03:12) [GCC 9.3.0] Operating system: posix linux E: pybuild pybuild:352: test: plugin custom failed with: exit code=1: set -e; \ mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home; \ mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/Tutorial /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Tests /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; \ cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home python3.8 run_tests.py --offline dh_auto_test: error: pybuild --test -i python{version} -p 3.8 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" returned exit code 13 make[1]: *** [debian/rules:83: override_dh_auto_test] Error 25
