Package: wnpp Severity: wishlist Subject: ITP: kleborate -- tool to screen Klebsiella genome assemblies Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : kleborate Version : 1.0.0 Upstream Author : Kat Holt, Ryan Wick (rrw...@gmail.com) * URL : https://github.com/katholt/Kleborate * License : GPL-3+ Programming Lang: Python Description : tool to screen Klebsiella genome assemblies Kleborate is a tool to screen Klebsiella genome assemblies for: . * MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/kleborate
