Source: mpi4py Version: 3.0.3-1 X-Debbugs-CC: debian...@lists.debian.org Severity: important User: debian...@lists.debian.org Usertags: timeout
Dear maintainers, Since a couple of weeks we have enabled autopkgtesting on arm64 in the Debian migration software. However, your package started fails because it times out (after 2:47h) in 6 out of 7 run on ci.debian.net. In Ubuntu, your test runs fine and finishes in typically 10 to 15 minutes. However, Ubuntu runs in VM's, while Debian runs in LXC, maybe that makes a difference. Can you please investigate the situation? If you need help from the CI team, don't hesitate to ask. I will blacklist this package on arm64 on the ci.debian.net infrastructure. I will remove the blacklist once this bug is fixed. Please note that failures on arm64 aren't considered RC yet, but that will change in some (hopefully near) future. Paul https://ci.debian.net/data/autopkgtest/testing/arm64/m/mpi4py/3473331/log.gz autopkgtest [21:45:57]: test command1: OMPI_MCA_rmaps_base_oversubscribe=yes mpiexec -n 5 pytest-3 --color=no autopkgtest [21:45:57]: test command1: [----------------------- ============================= test session starts ============================== platform linux -- Python 3.7.5, pytest-3.10.1, py-1.8.0, pluggy-0.13.0 ============================= test session starts ============================== platform linux -- Python 3.7.5, pytest-3.10.1, py-1.8.0, pluggy-0.13.0 rootdir: /tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src, inifile: setup.cfg rootdir: /tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src, inifile: setup.cfg collecting ... collecting ... ============================= test session starts ============================== platform linux -- Python 3.7.5, pytest-3.10.1, py-1.8.0, pluggy-0.13.0 rootdir: /tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src, inifile: setup.cfg collecting ... ============================= test session starts ============================== platform linux -- Python 3.7.5, pytest-3.10.1, py-1.8.0, pluggy-0.13.0 rootdir: /tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src, inifile: setup.cfg collecting ... ============================= test session starts ============================== platform linux -- Python 3.7.5, pytest-3.10.1, py-1.8.0, pluggy-0.13.0 rootdir: /tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src, inifile: setup.cfg collecting ... -------------------------------------------------------------------------- [[25636,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) Host: autopkgtest-testing-arm64 Another transport will be used instead, although this may result in lower performance. NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- -------------------------------------------------------------------------- The OSC pt2pt component does not support MPI_THREAD_MULTIPLE in this release. Workarounds are to run on a single node, or to use a system with an RDMA capable network such as Infiniband. -------------------------------------------------------------------------- collecting 256 items collecting 256 items collecting 256 items collecting 256 items collecting 256 items collecting 741 items collecting 741 items collecting 741 items collecting 741 items collecting 741 items [autopkgtest-testing-arm64:01615] [[25636,0],0] ORTE_ERROR_LOG: Data unpack had inadequate space in file util/show_help.c at line 513 collecting 1102 items collecting 1142 items collecting 1142 items collected 1142 items test/test_address.py ... collected 1142 items collected 1142 items collected 1142 items . test/test_address.py test/test_address.py test/test_address.py .... [ 0%] test/test_attributes.py ..... collected 1142 items .... test/test_address.py .... [ 0%] test/test_attributes.py [ 0%] test/test_attributes.py [ 0%] test/test_attributes.py .... [ 0%] test/test_attributes.py .................................................................................................................................................................................................ssssss.sssss.ssss.ssss.sssss.ssssss. [ 4%] s [ 4%] [ 4%] [ 4%] test/test_cco_buf.py [ 4%]s test/test_cco_buf.py [ 4%] test/test_cco_buf.py [ 4%] . [ 4%] test/test_cco_buf.py s....s...s.s....s......s.....s....s. [ 4%] [ 4%] test/test_cco_buf.py ................................................................................................................................................................................................................................. [ 9%] [ 9%] [ 9%] [ 9%] ......... [ 9%] ............................................................................................. [ 10%] [ 10%] [ 10%] [ 10%] test/test_cco_nb_buf.py test/test_cco_nb_buf.py test/test_cco_nb_buf.py test/test_cco_nb_buf.py [ 10%] test/test_cco_nb_buf.py ............................................................................................................................................................................................................................................... [ 15%] [ 15%] . [ 15%] [ 15%] [ 15%] .......................................................................................... [ 16%] [ 16%] [ 16%] [ 16%] [ 16%] test/test_cco_nb_vec.py test/test_cco_nb_vec.py test/test_cco_nb_vec.py test/test_cco_nb_vec.py test/test_cco_nb_vec.py ............................................................................................................................................................................................................................................. [ 20%] . [ 20%] . [ 20%] . [ 20%] [ 20%] .................... [ 21%] [ 21%] [ 21%] [ 21%] [ 21%] test/test_cco_ngh_buf.py test/test_cco_ngh_buf.py test/test_cco_ngh_buf.py test/test_cco_ngh_buf.py test/test_cco_ngh_buf.py ............................................................ [ 22%] [ 22%] [ 22%] [ 22%] [ 22%] test/test_cco_ngh_obj.py test/test_cco_ngh_obj.py test/test_cco_ngh_obj.py test/test_cco_ngh_obj.py test/test_cco_ngh_obj.py ........................................ [ 22%] [ 22%] [ 22%] [ 22%] [ 22%] test/test_cco_obj.py test/test_cco_obj.py test/test_cco_obj.py test/test_cco_obj.py test/test_cco_obj.py ........................................................................................................................................................................................................ [ 26%] [ 26%] [ 26%] [ 26%] [ 26%] test/test_cco_obj_inter.py test/test_cco_obj_inter.py test/test_cco_obj_inter.py test/test_cco_obj_inter.py test/test_cco_obj_inter.py ........................................................................................................................ [ 28%] [ 28%] [ 28%] [ 28%] test/test_cco_vec.py test/test_cco_vec.py [ 28%]test/test_cco_vec.py test/test_cco_vec.py test/test_cco_vec.py ...........................................................................[autopkgtest-testing-arm64:01615] 4 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics [autopkgtest-testing-arm64:01615] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [autopkgtest-testing-arm64:01615] 38 more processes have sent help message help-osc-pt2pt.txt / mpi-thread-multiple-not-supported .................................................................................................................................................................................... [ 33%] [ 33%] [ 33%] [ 33%] [ 33%] ................................... [ 33%] [ 33%] [ 33%] test/test_cffi.py test/test_cffi.py test/test_cffi.py [ 33%] [ 33%] test/test_cffi.py test/test_cffi.py ..... [ 33%] test/test_comm.py ... [ 33%] [ 33%] test/test_comm.py test/test_comm.py ...... [ 33%]. test/test_comm.py ................................................................... [ 33%] .test/test_comm.py ..................................................................................................................................................................................................... [ 38%] [ 38%] [ 38%] [ 38%] [ 38%] ................................................................. [ 39%] [ 39%] [ 39%] [ 39%] test/test_comm_inter.py test/test_comm_inter.py test/test_comm_inter.py test/test_comm_inter.py [ 39%] test/test_comm_inter.py ............................................................ [ 40%] [ 40%] [ 40%] [ 40%] test/test_comm_topo.py test/test_comm_topo.py test/test_comm_topo.py test/test_comm_topo.py [ 40%] test/test_comm_topo.py ........................................................................................................................................... [ 43%] [ 43%] [ 43%] [ 43%] test/test_ctypes.py test/test_ctypes.py test/test_ctypes.py test/test_ctypes.py ......... [ 43%] [ 43%] [ 43%] [ 43%] test/test_ctypes.py test/test_datatype.py test/test_datatype.py [ 43%] test/test_datatype.py test/test_datatype.py .......... [ 43%] test/test_datatype.py .............................................................................. [ 45%] test/test_dl.py ..... [ 45%] test/test_doc.py . [ 45%] test/test_dynproc.py ......... [ 45%] test/test_dl.py ......... [ 45%] test/test_doc.py ..... [ 45%] test/test_dynproc.py .. [ 45%] test/test_dl.py .......... [ 45%] test/test_doc.py . [ 45%] test/test_dl.py . [ 45%] test/test_dynproc.py .... [ 45%] test/test_doc.py . [ 45%] test/test_dynproc.py ........... [ 45%] test/test_dl.py .... [ 45%] test/test_doc.py . [ 45%] test/test_dynproc.py ..........F. [ 46%] test/test_environ.py .............. [ 47%] test/test_errhandler.py .....s [ 48%] test/test_errorcode.py ..... [ 48%] test/test_exceptions.py ....................................sssss... [ 52%] test/test_file.py .............. [ 53%] test/test_fortran.py ........... [ 54%] test/test_grequest.py ... [ 54%] test/test_group.py ................................................ [ 59%] test/test_info.py .......... [ 59%] test/test_io.py ..............autopkgtest [00:32:37]: ERROR: timed out on command "su -s /bin/bash debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true; . ~/.profile >/dev/null 2>&1 || true; buildtree="/tmp/autopkgtest-lxc.if0ag3ci/downtmp/build.ABj/src"; mkdir -p -m 1777 -- "/tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-artifacts"; export AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-artifacts"; export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755 "/tmp/autopkgtest-lxc.if0ag3ci/downtmp/autopkgtest_tmp"; export AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.if0ag3ci/downtmp/autopkgtest_tmp"; export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive; export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=32; unset LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo $$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f /tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; touch /tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-stdout /tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-stderr; bash -ec 'OMPI_MCA_rmaps_base_oversubscribe=yes mpiexec -n 5 pytest-3 --color=no' 2> >(tee -a /tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-stderr >&2) > >(tee -a /tmp/autopkgtest-lxc.if0ag3ci/downtmp/command1-stdout);" (kind: test) autopkgtest [00:32:38]: test command1: -----------------------]
signature.asc
Description: OpenPGP digital signature
