On 12/4/19 12:37 PM, Andreas Tille wrote: > Control: tags -1 moreinfo > Control: tags -1 unreproducible > > Hi Olivier, > > chado-utils installs nicely on my testing system. Does the > issue persist on your side or can we close this bug?
I could reproduce in a docker container on buster (and sid) after an apt update and upgrade apt/sources.list: /# more /etc/apt/sources.list # deb http://snapshot.debian.org/archive/debian/20190910T000000Z buster main deb http://deb.debian.org/debian buster main # deb http://snapshot.debian.org/archive/debian-security/20190910T000000Z buster/updates main deb http://security.debian.org/debian-security buster/updates main # deb http://snapshot.debian.org/archive/debian/20190910T000000Z buster-updates main deb http://deb.debian.org/debian buster-updates main An apt-get install chado-utils ends with: dpkg: error processing package libchado-perl (--configure): installed libchado-perl package post-installation script subprocess returned error exit status 2 Setting up libxmlrpc-lite-perl (0.717-2) ... dpkg: dependency problems prevent configuration of chado-utils: chado-utils depends on libchado-perl; however: Package libchado-perl is not configured yet. ..... ..... Errors were encountered while processing: libchado-perl chado-utils E: Sub-process /usr/bin/dpkg returned an error code (1) The error occurs in fact at libchado-perl: Setting up libchado-perl (1.31-5) ...^M dpkg: error processing package libchado-perl (--configure):^M installed libchado-perl package post-installation script subprocess returned error exit status 2^M Setting up libxmlrpc-lite-perl (0.717-2) ...^M dpkg: dependency problems prevent configuration of chado-utils:^M chado-utils depends on libchado-perl; however:^M Package libchado-perl is not configured yet.^M ^M dpkg: error processing package chado-utils (--configure):^M dependency problems - leaving unconfigured^M If I run manually the postinstall script, it "works", an exit code of 102 is executed (which is fine and trapped by script). If I rerun it I get an exitcode = 2 on line 47 (perl Makefile.PL update ....) This is my issue during apt install . It seems that it expects in env vars either: CHADO_DB_USERNAME or USER In container "world" , $USER is not set, so neither is available. So in postinst, I think we should add export CHADO_DB_USERNAME=chado next to export CHADO_DB_NAME > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
