Package: wnpp Severity: wishlist Subject: ITP: resfinder -- identifies acquired antimicrobial resistance genes Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : resfinder Version : 3.2 Upstream Author : Ole Lund, Technical University of Denmark * URL : https://bitbucket.org/genomicepidemiology/resfinder * License : Apache-2.0 Programming Lang: Python Description : identifies acquired antimicrobial resistance genes ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria. . ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/resfinder
