Source: discosnp Version: 2.3.0-2 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: flaky
Dear maintainer(s), With a recent upload of python-defaults to unstable, the autopkgtest of discosnp failed in testing when that autopkgtest was run with the binary packages of python-defaults from unstable. However, as we check for regression, the reference was retried and failed as well, without further changes. I looked into the history of your autopkgtest and it fails very often. Because the unstable-to-testing migration software now blocks on regressions in testing, flaky tests, i.e. tests that flip between passing and failing without changes to the list of installed packages, are causing people unrelated to your package to spend time on these tests. Please either fix the test to be more robust, or or use the "flaky" restriction for the offending test until a solution has been found. I copied the output at the bottom of this report. All the failing tests that I inspected look like it. I'll have the migration software ignore the results of your autopkgtest until this bug is fixed. Paul https://ci.debian.net/data/autopkgtest/unstable/amd64/d/discosnp/3153055/log.gz autopkgtest [08:02:13]: test run-unit-test: [----------------------- use read set: fof.txt Running discoSnp++ 2.3.X, in directory /usr with following parameters: read_sets=fof.txt prefix=discoRes_k_31_c_auto c=auto C=2147483647 k=31 b=0 d=1 D=100 starting date=Mon Oct 14 08:02:14 UTC 2019 ############################################################ #################### GRAPH CREATION ####################### ############################################################ /usr/bin/dbgh5 -in fof.txt_discoRes_k_31_c_auto_D_100_P_1_b_0_removemeplease -out discoRes_k_31_c_auto -kmer-size 31 -abundance-min auto -abundance-max 2147483647 -solidity-kind one -verbose 1 -skip-bcalm -skip-bglue -no-mphf [DSK: counting kmers ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: -1.0 % mem: [ 14, 14, 36] MB [DSK: Pass 1/1, Step 1: partitioning ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: -1.0 % mem: [ 46, 46, 46] MB EXCEPTION: Pool allocation failed for 128 bytes (kmers alloc), mainbuffer is null?. Current usage is 144 and capacity is 5242881056 Pool allocation failed for 1288 bytes (kmers alloc), mainbuffer is null?. Current usage is 1448 and capacity is 5242881056 there was a problem with graph construction diff: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory *** Test: FAILURE on diff .fa autopkgtest [08:02:15]: test run-unit-test: -----------------------]
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