On 9/13/19 3:43 PM, Andreas Tille wrote: > Hi, > > I upgraded the igv packaging Git[1] to the latest upstream version. I > never experienced a smooth upgrade to any igv version - but I always > experienced help from a Java expert here on the list. May be it is time > again to fix:
I had a quick look, but no idea here. Related Java 11 module loading. Should ask debian Java team I think on hjow to handle this. Dependencies are in maven-repo, but gradle does not seem to find them as "modules" or related jar files are not seen as modules. Olivier > > > All input files are considered out-of-date for incremental task > ':compileJava'. > Compiling with JDK Java compiler API. > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:7: error: module not > found: ant > requires ant; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:8: error: module not > found: com.google.common > requires com.google.common; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:9: error: module not > found: commons.io > requires commons.io; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:10: error: module not > found: commons.math > requires commons.math; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:12: error: module not > found: gson > requires gson; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:13: error: module not > found: htsjdk > requires htsjdk; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:22: error: module not > found: log4j > requires log4j; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:23: error: module not > found: org.apache.logging.log4j > requires org.apache.logging.log4j; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:24: error: module not > found: org.apache.logging.log4j.core > requires org.apache.logging.log4j.core; > ^ > /build/igv-2.6.3+dfsg/src/main/java11/module-info.java:25: error: module not > found: swing.layout > requires swing.layout; > ^ > 10 errors > :compileJava FAILED > :compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.782 secs. > > FAILURE: Build failed with an exception. > > > The failures are looking like missing Build-Depends at first look but these > should be OK. Any volunteer? > > Kind regards > > Andreas. > > > [1] https://salsa.debian.org/med-team/igv > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
