Package: gmt Version: 5.4.5+dfsg-1 Severity: normal -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
Hi, this sequence of commands causes a segementation fault. This is a regression; this is from a project from a few years back and worked then: wget -c http://dds.cr.usgs.gov/srtm/version2_1/SRTM3/Eurasia/N45E0{06,07}.hgt.zip unzip N45E006.hgt.zip gmt xyz2grd N45E006.hgt -R6/7/45/46 -I3s -di-32768 -ZTLhw -GN45E006.grd gmt grd2xyz N45E006.grd >N45E006.txt gmt surface N45E006.txt -RN45E006.grd -T0.35 -GN45E006.grd unzip N45E007.hgt.zip gmt xyz2grd N45E007.hgt -R7/8/45/46 -I3s -di-32768 -ZTLhw -GN45E007.grd gmt grd2xyz N45E007.grd >N45E007.txt gmt surface N45E007.txt -RN45E007.grd -T0.35 -GN45E007.grd cp N45E006.grd 45tmp.grd gmt grdpaste 45tmp.grd N45E007.grd -G45tmp.grd ERROR: Caught signal number 11 (Segmentation fault) at /usr/lib/x86_64-linux-gnu/libnetcdf.so.13(NC_check_nulls+0xc7)[0x7f9dbb8af9a7] [0x0] Stack backtrace: /usr/lib/x86_64-linux-gnu/libgmt.so.5(sig_handler+0x2ac)[0x7f9dbb9f006c] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12670)[0x7f9dbb4c9670] /usr/lib/x86_64-linux-gnu/libnetcdf.so.13(NC_check_nulls+0xc7)[0x7f9dbb8af9a7] /usr/lib/x86_64-linux-gnu/libnetcdf.so.13(+0x2df9f)[0x7f9dbb8aff9f] /usr/lib/x86_64-linux-gnu/libnetcdf.so.13(nc_get_varm_float+0xf)[0x7f9dbb8b133f] /usr/lib/x86_64-linux-gnu/libgmt.so.5(+0x91c24)[0x7f9dbba54c24] /usr/lib/x86_64-linux-gnu/libgmt.so.5(gmt_nc_read_grd+0x826)[0x7f9dbba55bb6] /usr/lib/x86_64-linux-gnu/libgmt.so.5(gmtlib_read_grd+0x9e)[0x7f9dbba37ede] /usr/lib/x86_64-linux-gnu/libgmt.so.5(+0x488e8)[0x7f9dbba0b8e8] /usr/lib/x86_64-linux-gnu/libgmt.so.5(GMT_Read_Data+0x4c3)[0x7f9dbba0d213] /usr/lib/x86_64-linux-gnu/libgmt.so.5(GMT_grdpaste+0x3e0)[0x7f9dbbbaddc0] /usr/lib/x86_64-linux-gnu/libgmt.so.5(GMT_Call_Module+0xc0)[0x7f9dbb9faf50] gmt(main+0x5c6)[0x55ef48806716] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xeb)[0x7f9db8ca709b] gmt(_start+0x2a)[0x55ef48806cda] Cheers, Joachim - -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-2-amd64 (SMP w/8 CPU cores) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages gmt depends on: ii gmt-common 5.4.5+dfsg-1 ii libatlas3-base [liblapack.so.3] 3.10.3-8 ii libblas3 [libblas.so.3] 3.8.0-2 ii libc6 2.28-5 ii libcurl3-gnutls 7.63.0-1 ii libfftw3-single3 3.3.8-2 ii libgdal20 2.4.0+dfsg-1+b1 ii libgmt5 5.4.5+dfsg-1 ii libhdf5-103 1.10.4+repack-9 ii liblapack3 [liblapack.so.3] 3.8.0-2 ii libnetcdf13 1:4.6.2-1 ii libpcre3 2:8.39-11 ii libsz2 1.0.2-1 ii zlib1g 1:1.2.11.dfsg-1 Versions of packages gmt recommends: ii gmt-dcw 1.1.4-2 ii gmt-doc 5.4.5+dfsg-1 ii gmt-gshhg-full [gmt-gshhg-data] 2.3.7-4 ii gmt-gshhg-high [gmt-gshhg-data] 2.3.7-4 ii gmt-gshhg-low [gmt-gshhg-data] 2.3.7-4 Versions of packages gmt suggests: pn gmt-examples <none> - -- no debconf information -----BEGIN PGP SIGNATURE----- iHAEARECADEWIQQxTjstYFpus1p9gRn2KOuTR0MgbAUCXOJxyRMcbm9tZWF0YUBk ZWJpYW4ub3JnAAoJEPYo65NHQyBsZHwAmKLZL5/EiajG0KVywiooW7s3zYEAoI48 ZmEUs8WoHiwXYLmO1DFc0Nb8 =O9GL -----END PGP SIGNATURE-----
