I have this or a similar problem.  My system clock run about 4% fast-- 
gaining an hour a day.  To compensate I've had to set adjtimex --tick 
9600, which approximately corrects for the drift.  But the drift rate 
isn't constant, and ntpd can't keep up.  Here what I get when I run 
ntpdate once a minute:

20 Mar 05:05:58 ntpdate[17703]: step time server 168.75.65.20 offset 
0.060836 sec
20 Mar 05:06:55 ntpdate[17724]: step time server 168.75.65.20 offset 
-0.514396 sec
20 Mar 05:07:53 ntpdate[17734]: step time server 168.75.65.20 offset 
0.263715 sec
20 Mar 05:08:51 ntpdate[17740]: step time server 168.75.65.20 offset 
-0.047366 sec
20 Mar 05:09:48 ntpdate[17746]: step time server 168.75.65.20 offset 
-0.215751 sec
20 Mar 05:10:45 ntpdate[17755]: step time server 168.75.65.20 offset 
-0.646224 sec
20 Mar 05:11:42 ntpdate[17763]: step time server 168.75.65.20 offset 
-1.274522 sec

Right after I boot the clock drift rate is stable at about -50 PPM, but 
then after a few hours it starts to go nuts.

I'm running a custom 64-bit kernel 2.6.15.  CPU is Athlon64 X2 4200+, 
chipset is nForce4.  I don't think I can have the "AMD/ATI bug" as in 
http://bugs.debian.org/338467, because I don't have an ATI chipset.  
Anyway I've tried booting with each of

disable_timer_pin_1 (my host won't boot)
no_timer_check
noapic acpi=off
clock=pmtmr notsc

I also disabled CPU frequency spread spectrum in the BIOS.  The result is 
always the same-- the clock is stable after I boot, but a few hours later 
it goes nuts again.

Any help would be greatly appreciated.
Andrew.


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