Control: tags -1 help
Hi David,
as far as I know you are involved into bioperl and might be the most
competent person for this problem. I've found the following competing
filed in bioperl and bioperl-run:
bioperl-run(master) $ find . -name "Analysis.pm" -o -name "AnalysisFactory.pm"
./lib/Bio/Tools/Run/AnalysisFactory.pm
./lib/Bio/Tools/Run/Analysis.pm
bioperl(master) $ find . -name "Analysis.pm" -o -name "AnalysisFactory.pm"
./lib/Bio/Tools/Run/AnalysisFactory.pm
./lib/Bio/Tools/Run/Analysis.pm
Any suggestion how to deal with this sensibly? I would expect some
soonish release of bioperl-run which does not contain these files any
more, but you might know better.
Kind regards
Andreas.
On Wed, Feb 06, 2019 at 07:40:25AM +0100, Nicolas Patrois wrote:
> Package: libbio-perl-perl
> Version: 1.7.2-3
> Severity: normal
>
> Dear Maintainer,
>
> The package can’t be upgraded because one of its files
> (/usr/share/man/man3/Bio::Tools::Run::Analysis.3pm.gz) conflicts with libbio-
> perl-run-perl.
>
>
>
> -- System Information:
> Debian Release: buster/sid
> APT prefers unstable
> APT policy: (500, 'unstable')
> Architecture: i386 (i686)
>
> Kernel: Linux 4.17.0-3-686-pae (SMP w/3 CPU cores)
> Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
> Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8),
> LANGUAGE=fr_FR:fr:en_GB:en (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
> LSM: AppArmor: enabled
>
> Versions of packages libbio-perl-perl depends on:
> ii libdata-stag-perl 0.14-2
> ii libio-string-perl 1.08-3
> ii perl 5.28.1-4
>
> Versions of packages libbio-perl-perl recommends:
> ii libace-perl 1.92-8+b1
> ii libalgorithm-munkres-perl 0.08-3
> pn libarray-compare-perl <none>
> ii libbio-asn1-entrezgene-perl 1.720-2
> ii libbio-perl-run-perl 1.7.2-4
> ii libclone-perl 0.41-1+b1
> ii libconvert-binary-c-perl 0.78-1+b4
> pn libdbd-mysql-perl <none>
> pn libdbd-pg-perl <none>
> pn libdbd-sqlite3-perl <none>
> pn libgd-perl <none>
> ii libgraph-perl 1:0.9704-1
> ii libgraphviz-perl 2.22-1
> ii libhtml-parser-perl 3.72-3+b3
> ii libhtml-tableextract-perl 2.15-1
> ii liblist-moreutils-perl 0.416-1+b4
> ii libpostscript-perl 0.06-3
> ii libset-scalar-perl 1.29-2
> ii libsoap-lite-perl 1.27-1
> ii libsort-naturally-perl 1.03-2
> ii libspreadsheet-parseexcel-perl 0.6500-1
> ii libspreadsheet-writeexcel-perl 2.40-1
> pn libstorable-perl <none>
> pn libsvg-graph-perl <none>
> ii libsvg-perl 2.84-1
> ii liburi-perl 1.76-1
> ii libwww-perl 6.36-1
> ii libxml-dom-xpath-perl 0.14-3
> ii libxml-libxml-perl 2.0133+dfsg-1
> ii libxml-parser-perl 2.44-2+b4
> ii libxml-sax-perl 1.00+dfsg-1
> ii libxml-sax-writer-perl 0.57-1
> ii libxml-simple-perl 2.25-1
> ii libxml-twig-perl 1:3.50-1
> ii libxml-writer-perl 0.625-1
>
> Versions of packages libbio-perl-perl suggests:
> pn bioperl <none>
> pn libxml-sax-expatxs-perl <none>
>
> -- no debconf information
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