Package: python3-fabio Version: 0.8.0+dfsg-1 Severity: normal Dear Maintainer,
I have tried to reproduce the hdf5 example from the fabio manual on data from the Diamond Light Source and ran into errors. The data can be obtained from https://zenodo.org/record/2529979#.XEhDGpwo_zJ This is what I did: >>> import fabio, h5py >>> h5_file = h5py.File("thaumatin_9_1_master.h5") >>> print(list(h5_file.keys())) ['entry'] >>> print(list(h5_file["entry"].keys())) ['data', 'definition', 'end_time', 'instrument', 'sample', 'start_time'] >>> print(h5_file["entry/data_000001"].shape) Traceback (most recent call last): File "<stdin>", line 1, in <module> File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "/usr/lib/python3/dist-packages/h5py/_hl/group.py", line 177, in __getitem__ oid = h5o.open(self.id, self._e(name), lapl=self._lapl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5o.pyx", line 190, in h5py.h5o.open KeyError: "Unable to open object (object 'data_000001' doesn't exist)" -- System Information: Debian Release: buster/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-1-amd64 (SMP w/8 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US:en (charmap=UTF-8) Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-fabio depends on: ii libc6 2.28-5 ii python3 3.7.1-3 ii python3-h5py 2.8.0-3 ii python3-lxml 4.3.0-1 ii python3-matplotlib 3.0.2-2 ii python3-numpy [python3-numpy-abi9] 1:1.16.0-1 ii python3-pil 5.4.1-1 ii python3-pkg-resources 40.6.3-1 ii python3-pyqt5 5.11.3+dfsg-1+b3 ii python3-six 1.12.0-1 python3-fabio recommends no packages. Versions of packages python3-fabio suggests: pn python-fabio-doc <none> -- no debconf information
