Package: hhsuite-data Severity: important Control: tags -1 + patch Hello,
hhsuite-data does not provide /usr/share/hhsuite/data/context_data.crf, which is the default context file for computing context-specific pseudocounts. This effectively breaks hhmake and hhblits unless path to existing context_data.crf is provided via '-contxt' command line option. Steps to reproduce: andrius@amalas:~$ gunzip -c /usr/share/doc/hhsuite/examples/query.a3m.gz > query.a3m andrius@amalas:~$ hhmake -i query.a3m - 01:33:47.860 ERROR: Could not open file '/usr/share/hhsuite/data/context_data.crf' The following patch should fix the bug (was not able to try due to #917495): diff --git a/debian/hhsuite-data.install b/debian/hhsuite-data.install index e4403f1..f7d762c 100644 --- a/debian/hhsuite-data.install +++ b/debian/hhsuite-data.install @@ -1,4 +1,6 @@ usr/data/context_data.lib usr/share/hhsuite/data +usr/data/context_data.crf usr/share/hhsuite/data usr/data/cs219.lib usr/share/hhsuite/data usr/data/context_data.lib usr/lib/hhsuite/data +usr/data/context_data.crf usr/lib/hhsuite/data usr/data/cs219.lib usr/lib/hhsuite/data diff --git a/debian/hhsuite-data.links b/debian/hhsuite-data.links index 4efda75..e9a226f 100644 --- a/debian/hhsuite-data.links +++ b/debian/hhsuite-data.links @@ -1,2 +1,3 @@ usr/share/hhsuite/data/context_data.lib usr/lib/hhsuite/data/context_data.lib +usr/share/hhsuite/data/context_data.crf usr/lib/hhsuite/data/context_data.crf usr/share/hhsuite/data/cs219.lib usr/lib/hhsuite/data/cs219.lib Best, Andrius [#917495] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=917495 -- Andrius Merkys Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania
