Source: nibabel Version: 2.3.1-1 Severity: serious Justification: FTBFS on amd64 Tags: buster sid Usertags: ftbfs-20181229 ftbfs-buster
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>' > /bin/sh: 1: git: not found > python2.7 setup.py config --noisy > Missing optional package "dicom" provided by package "pydicom"; you may get > run-time errors > running config > python2.7 setup.py build > Missing optional package "dicom" provided by package "pydicom"; you may get > run-time errors > running build > running build_py > running build_scripts > /<<PKGBUILDDIR>>/nibabel/checkwarns.py:19: FutureWarning: The checkwarns > module is deprecated and will be removed in nibabel v3.0 > 'in nibabel v3.0', FutureWarning) > /usr/lib/python2.7/dist-packages/nose/importer.py:94: FutureWarning: We no > longer carry a copy of the 'six' package in nibabel; Please import the 'six' > package directly > mod = load_module(part_fqname, fh, filename, desc) > /usr/lib/python2.7/dist-packages/nose/importer.py:94: FutureWarning: We will > remove this module from nibabel soon; Please use the 'minc1' module instead > mod = load_module(part_fqname, fh, filename, desc) > /usr/lib/python2.7/dist-packages/nose/importer.py:94: UserWarning: The DICOM > readers are highly experimental, unstable, and only work for Siemens > time-series at the moment > Please use with caution. We would be grateful for your help in improving them > mod = load_module(part_fqname, fh, filename, desc) > ........................................................................................................................../<<PKGBUILDDIR>>/nibabel/nifti1.py:1590: > UserWarning: Multiple slice orders satisfy: sequential increasing, > alternating increasing, alternating decreasing 2. Choosing the first one > % ', '.join(matching_labels) > ................................................................SSSSSSSSSSS...............................................................................SSS.S...S...................................................................................S.....SSSS...S....................................../<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py:23: > FutureWarning: Conversion of the second argument of issubdtype from `bool` > to `np.generic` is deprecated. In future, it will be treated as `np.bool_ == > np.dtype(bool).type`. > np.issubdtype(obj.dtype, np.bool))) > ........./<<PKGBUILDDIR>>/nibabel/streamlines/tractogram.py:776: Warning: > Number of streamlines will be determined manually by looping through the > streamlines. If you know the actual number of streamlines, you might want to > set it beforehand via `self.header.nb_streamlines`. > " `self.header.nb_streamlines`.", Warning) > ..E.E.EE....EEEEE.EE.............................E.E.E............................................................................................E.........................................................................................................................................S....................................S.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................S.........................................S........SSSSSSSSSSSSSS.............................................................S.............S..............................................................................S..........E..................E...................E..................E.................................S......................................................S.........................................SS........E..................E...................E..................E.................................S......................................................S...........................................E..................E...................E..................E................................................................................................................................................/<<PKGBUILDDIR>>/nibabel/tests/test_orientations.py:108: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > vals = t_arr[list(o2t_pts.astype('i'))] > ..........................................SSS.../usr/lib/python2.7/dist-packages/scipy/ndimage/interpolation.py:450: > UserWarning: The behaviour of affine_transform with a one-dimensional array > supplied for the matrix parameter has changed in scipy 0.18.0. > "The behaviour of affine_transform with a one-dimensional " > ../<<PKGBUILDDIR>>/nibabel/processing.py:306: RuntimeWarning: invalid value > encountered in true_divide > vox_fwhm = fwhm / vox > ...............S.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................S....SEE.................................................................E....................................................................E.............................................../<<PKGBUILDDIR>>/nibabel/viewers.py:416: > FutureWarning: Using a non-tuple sequence for multidimensional indexing is > deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this > will be interpreted as an array index, `arr[np.array(seq)]`, which will > result either in an error or a different result. > vdata = self._data[idx].ravel() > ..E..EE....................................................................... > ====================================================================== > ERROR: test_load_simple_file > (nibabel.streamlines.tests.test_streamlines.TestLoadSave) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_streamlines.py", line > 152, in test_load_simple_file > lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_save_complex_file > (nibabel.streamlines.tests.test_streamlines.TestLoadSave) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_streamlines.py", line > 267, in test_save_complex_file > tfile = nib.streamlines.load(filename, lazy_load=False) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_save_from_generator > (nibabel.streamlines.tests.test_streamlines.TestLoadSave) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_streamlines.py", line > 289, in test_save_from_generator > tfile = nib.streamlines.load(filename, lazy_load=False) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_save_simple_file > (nibabel.streamlines.tests.test_streamlines.TestLoadSave) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_streamlines.py", line > 229, in test_save_simple_file > tfile = nib.streamlines.load(filename, lazy_load=False) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_file_with_wrong_information > (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 103, in > test_load_file_with_wrong_information > tck = TckFile.load(BytesIO(new_tck_file)) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_simple_file (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 54, in > test_load_simple_file > tck = TckFile.load(DATA['simple_tck_fname'], lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_simple_file_in_big_endian > (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 81, in > test_load_simple_file_in_big_endian > lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_write_file (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 188, in > test_load_write_file > tck = TckFile.load(fname, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_str (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 216, in > test_str > tck = TckFile.load(DATA['simple_tck_fname']) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_write_simple_file (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 165, in > test_write_simple_file > new_tck = TckFile.load(tck_file) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_writeable_data (nibabel.streamlines.tests.test_tck.TestTCK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_tck.py", line 71, in > test_writeable_data > tck = TckFile.load(DATA[key], lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_complex_file_in_big_endian > (nibabel.streamlines.tests.test_trk.TestTRK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 194, in > test_load_complex_file_in_big_endian > 'complex_trk_big_endian_fname', endian='>') > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 109, in > trk_with_bytes > trk_struct.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_file_with_wrong_information > (nibabel.streamlines.tests.test_trk.TestTRK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 114, in > test_load_file_with_wrong_information > trk_struct1, trk_bytes1 = self.trk_with_bytes() > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 109, in > trk_with_bytes > trk_struct.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_trk_version_1 (nibabel.streamlines.tests.test_trk.TestTRK) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 178, in > test_load_trk_version_1 > trk_struct, trk_bytes = self.trk_with_bytes() > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tests/test_trk.py", line 109, in > trk_with_bytes > trk_struct.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_analyze.TestAnalyzeImage) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti1.TestNifti1Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti1.TestNifti1Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti1.TestNifti1Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti1.TestNifti1Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti2.TestNifti1Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti2.TestNifti1Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti2.TestNifti1Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti2.TestNifti1Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti2.TestNifti2Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti2.TestNifti2Image) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts (nibabel.tests.test_nifti2.TestNifti2Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_load_save (nibabel.tests.test_nifti2.TestNifti2Pair) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/nibabel/tests/test_nifti1.py", line 971, in > test_load_save > assert_array_equal(img3.get_data(), data) > File "/<<PKGBUILDDIR>>/nibabel/dataobj_images.py", line 202, in get_data > data = np.asanyarray(self._dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 591, in > asanyarray > return array(a, dtype, copy=False, order=order, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: nibabel.tests.test_scripts.test_nib_trk2tck > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_scripts.py", line 442, in > test_nib_trk2tck > tck = nib.streamlines.load(simple_tck) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: nibabel.tests.test_scripts.test_nib_tck2trk > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_scripts.py", line 484, in > test_nib_tck2trk > code, stdout, stderr = run_command(cmd) > File "/<<PKGBUILDDIR>>/nibabel/tests/scriptrunner.py", line 166, in > run_command > """.format(cmd, stdout, stderr)) > RuntimeError: Command "['/usr/bin/python2.7', > '/<<PKGBUILDDIR>>/bin/nib-tck2trk', > '/<<PKGBUILDDIR>>/nibabel/tests/data/standard.nii.gz', > '/tmp/tmp7HbW5v/standard.tck']" failed with > stdout > ------ > > stderr > ------ > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/bin/nib-tck2trk", line 18, in <module> > main() > File "/<<PKGBUILDDIR>>/nibabel/cmdline/tck2trk.py", line 55, in main > tck = nib.streamlines.load(tractogram) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/__init__.py", line 96, in load > return tractogram_file.load(fileobj, lazy_load=lazy_load) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 154, in load > streamlines = ArraySequence(tck_reader) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 93, in > __init__ > self.extend(iterable) > File "/<<PKGBUILDDIR>>/nibabel/streamlines/array_sequence.py", line 239, in > extend > for e in elements: > File "/<<PKGBUILDDIR>>/nibabel/streamlines/tck.py", line 436, in _read > pts.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > > > ====================================================================== > ERROR: test_big_offset_exts > (nibabel.tests.test_spm2analyze.TestSpm2AnalyzeImage) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib/python2.7/dist-packages/numpy/testing/_private/decorators.py", line > 155, in skipper_func > return f(*args, **kwargs) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: test_big_offset_exts > (nibabel.tests.test_spm99analyze.TestSpm99AnalyzeImage) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib/python2.7/dist-packages/numpy/testing/_private/decorators.py", line > 155, in skipper_func > return f(*args, **kwargs) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_analyze.py", line 809, in > test_big_offset_exts > assert_array_equal(arr, img_back.dataobj) > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 872, in assert_array_equal > verbose=verbose, header='Arrays are not equal') > File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", > line 692, in assert_array_compare > y = array(y, copy=False, subok=True) > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 356, in __array__ > raw_data = self.get_unscaled() > File "/<<PKGBUILDDIR>>/nibabel/arrayproxy.py", line 351, in get_unscaled > mmap=self._mmap) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: nibabel.tests.test_volumeutils.test_fobj_string_assumptions > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_volumeutils.py", line 109, in > test_fobj_string_assumptions > out_arr = make_array(n, contents1) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_volumeutils.py", line 89, in > make_array > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: nibabel.tests.test_volumeutils.test_array_from_file_openers > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_volumeutils.py", line 240, in > test_array_from_file_openers > out_arr = array_from_file(shape, dtype, in_buf, offset) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ====================================================================== > ERROR: nibabel.tests.test_volumeutils.test_array_from_file_reread > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest > self.test(*self.arg) > File "/<<PKGBUILDDIR>>/nibabel/tests/test_volumeutils.py", line 272, in > test_array_from_file_reread > out_arr = array_from_file(shape, dtt, fobj_r, offset, order) > File "/<<PKGBUILDDIR>>/nibabel/volumeutils.py", line 543, in array_from_file > arr.flags.writeable = True > ValueError: cannot set WRITEABLE flag to True of this array > > ---------------------------------------------------------------------- > Ran 7752 tests in 78.385s > > FAILED (SKIP=55, errors=34) > make[2]: *** [Makefile:94: unittest] Error 1 The full build log is available from: http://aws-logs.debian.net/2018/12/29/nibabel_2.3.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.