Source: libbiod Severity: serious Version: 0.1.0-3 Hello, seems the latest changes in unstable somewhat broke libbiod linker.
ldc2 -of biod_test 'biod_test@exe/test_unittests.d.o' 'biod_test@exe/bio_bam_utils_value.d.o' 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' 'biod_test@exe/bio_bam_utils_array.d.o' 'biod_test@exe/bio_bam_utils_graph.d.o' 'biod_test@exe/bio_bam_pileup.d.o' 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reader.d.o' 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' 'biod_test@exe/bio_bam_baifile.d.o' 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_abstractreader.d.o' 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_reference.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_parse.d.o' 'biod_test@exe/bio_bam_md_reconstruct.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' 'biod_test@exe/bio_bam_validation_alignment.d.o' 'biod_test@exe/bio_bam_validation_samheader.d.o' 'biod_test@exe/bio_bam_region.d.o' 'biod_test@exe/bio_bam_randomaccessmanager.d.o' 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_constants.d.o' 'biod_test@exe/bio_bam_snpcallers_maq.d.o' 'biod_test@exe/bio_bam_snpcallers_simple.d.o' 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' 'biod_test@exe/bio_maf_reader.d.o' 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_block.d.o' 'biod_test@exe/bio_core_utils_memoize.d.o' 'biod_test@exe/bio_core_utils_algo.d.o' 'biod_test@exe/bio_core_utils_stream.d.o' 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_core_utils_tmpfile.d.o' 'biod_test@exe/bio_core_utils_roundbuf.d.o' 'biod_test@exe/bio_core_utils_format.d.o' 'biod_test@exe/bio_core_utils_bylinefast.d.o' 'biod_test@exe/bio_core_utils_range.d.o' 'biod_test@exe/bio_core_utils_switchendianness.d.o' 'biod_test@exe/bio_core_utils_outbuffer.d.o' 'biod_test@exe/bio_core_genotype.d.o' 'biod_test@exe/bio_core_fasta.d.o' 'biod_test@exe/bio_core_base.d.o' 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' 'biod_test@exe/bio_core_tinymap.d.o' 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_bgzf_outputstream.d.o' 'biod_test@exe/bio_core_bgzf_chunk.d.o' 'biod_test@exe/bio_core_bgzf_inputstream.d.o' 'biod_test@exe/bio_core_bgzf_constants.d.o' 'biod_test@exe/bio_core_bgzf_block.d.o' 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' 'biod_test@exe/bio_core_bgzf_compress.d.o' 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_index.d.o' 'biod_test@exe/bio_sff_readrange.d.o' 'biod_test@exe/bio_sff_reader.d.o' 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_writer.d.o' 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' 'biod_test@exe/bio_sam_utils_recordparser.d.o' 'biod_test@exe/bio_sam_reader.d.o' 'biod_test@exe/bio_sam_header.d.o' -O -g -release -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi': (.text._D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi[_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi]+0x11f2): undefined reference to `_D3std3utf7toUTF16FNaNfxAaZAyu' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi': (.text._D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi[_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi]+0x1213): undefined reference to `_D3std3utf7toUTF32FNaNfxAaZAyw' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv]+0x540): undefined reference to `_D3std3utf6toUTF8FNaNfxAuZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv]+0x5bf): undefined reference to `_D3std3utf6toUTF8FNaNfxAwZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv]+0x11a3): undefined reference to `_D3std3utf6toUTF8FNaNfxAwZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv]+0x128a): undefined reference to `_D3std3utf6toUTF8FNaNfxAuZAya' collect2: error: ld returned 1 exit status Buildlog attached G.
[0;34mD: cmdline: build --distribution sid --buildresult /home/locutus/pbuilder/sid_result --basetgz /home/locutus/pbuilder/sid-base.tgz --logfile /home/locutus/pbuilder/sid_result/libbiod_0.1.0-3_amd64.build --mirror http://httpredir.debian.org/debian --debootstrapopts --keyring=/usr/share/keyrings/debian-archive-keyring.gpg --aptcache /home/locutus/pbuilder/aptcache/debian --components main contrib non-free libbiod_0.1.0-3.dsc[0m [0mI: using fakeroot in build.[0m [0mI: pbuilder: network access will be disabled during build[0m [0mI: Current time: Sat Jul 15 16:36:52 CEST 2017[0m [0mI: pbuilder-time-stamp: 1500129412[0m [0mI: Building the build Environment[0m [0mI: extracting base tarball [/home/locutus/pbuilder/sid-base.tgz][0m [0mI: copying local configuration[0m [1;33mW: --override-config is not set; not updating apt.conf Read the manpage for details.[0m [0mI: mounting /proc filesystem[0m [0mI: mounting /sys filesystem[0m [0mI: creating /{dev,run}/shm[0m [0mI: mounting /dev/pts filesystem[0m [0mI: policy-rc.d already exists[0m [0mI: Obtaining the cached apt archive contents[0m [0mI: Copying source file[0m [0mI: copying [libbiod_0.1.0-3.dsc][0m [0mI: copying [./libbiod_0.1.0.orig.tar.gz][0m [0mI: copying [./libbiod_0.1.0-3.debian.tar.xz][0m [0mI: Extracting source[0m gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/home/locutus/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 10 08:09:46 2017 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "ti...@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbiod_0.1.0-3.dsc dpkg-source: info: extracting libbiod in libbiod-0.1.0 dpkg-source: info: unpacking libbiod_0.1.0.orig.tar.gz dpkg-source: info: unpacking libbiod_0.1.0-3.debian.tar.xz dpkg-source: info: applying 0002-improved-big-endian-support.patch dpkg-source: info: applying 0003-include-the-AH-header-tag-to-SQ-lines.patch dpkg-source: info: applying 0004-use-consistent-naming-21.patch dpkg-source: info: applying 0005-fixes-lomereiter-sambamba-244.patch dpkg-source: info: applying 0006-switch-to-undead.stream.patch dpkg-source: info: applying 0007-std.c-core.stdc.patch dpkg-source: info: applying 0008-fix-deprecations-and-some-warnings.patch dpkg-source: info: applying 0009-fix-toHash-signature.patch dpkg-source: info: applying 0011-better-.travis.yml-uses-dub-test-and-tests-ldc.patch dpkg-source: info: applying 0013-fix-toJSON-usage-for-new-and-old-compilers.patch dpkg-source: info: applying 0014-Add-compareCoordinatesAndStrand-to-fix-sorting-test-.patch dpkg-source: info: applying 0015-Add-Meson-build-definition.patch dpkg-source: info: applying 0016-fix-type-conversion.patch [0mI: Installing the build-deps[0m -> Attempting to parse the build-deps -> Considering build-depdebhelper (>= 10) -> Trying to add debhelper -> Considering build-dep ldc -> Trying to add ldc -> Considering build-dep meson (>= 0.38) -> Trying to add meson -> Considering build-dep pkg-config -> Trying to add pkg-config -> Considering build-dep libundead-dev -> Trying to add libundead-dev -> Considering build-dep zlib1g-dev -> Trying to add zlib1g-dev -> Installing debhelper ldc meson pkg-config libundead-dev zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libconfig9 libcroco3 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libllvm3.9 libmagic-mgc libmagic1 libmpdec2 libncurses5 libphobos2-ldc-dev libphobos2-ldc72 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support ninja-build po-debconf python3 python3-minimal python3.5 python3.5-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.5-venv python3.5-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian ldc libarchive-zip-perl libbsd0 libconfig9 libcroco3 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libllvm3.9 libmagic-mgc libmagic1 libmpdec2 libncurses5 libphobos2-ldc-dev libphobos2-ldc72 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libundead-dev libxml2 m4 man-db meson mime-support ninja-build pkg-config po-debconf python3 python3-minimal python3.5 python3.5-minimal readline-common zlib1g-dev 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 22.1 MB/48.0 MB of archives. After this operation, 238 MB of additional disk space will be used. Get:1 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.2-1 [86.4 kB] Get:2 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:3 http://cdn-fastly.deb.debian.org/debian sid/main amd64 debhelper all 10.6.4 [970 kB] Get:4 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libphobos2-ldc72 amd64 1:1.2.0-1 [1053 kB] Get:5 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libphobos2-ldc-dev amd64 1:1.2.0-1 [6810 kB] Get:6 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libconfig9 amd64 1.5-0.3 [29.7 kB] Get:7 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libllvm3.9 amd64 1:3.9.1-10 [11.3 MB] Get:8 http://cdn-fastly.deb.debian.org/debian sid/main amd64 ldc amd64 1:1.2.0-1 [1295 kB] Get:9 http://cdn-fastly.deb.debian.org/debian sid/main amd64 libundead-dev amd64 1.0.6-2 [158 kB] Get:10 http://cdn-fastly.deb.debian.org/debian sid/main amd64 ninja-build amd64 1.7.2-3 [93.1 kB] Get:11 http://cdn-fastly.deb.debian.org/debian sid/main amd64 meson all 0.41.1-1 [179 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.1 MB in 13s (1606 kB/s) Selecting previously unselected package groff-base. 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Processing triggers for libc-bin (2.24-12) ... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/131 kB of archives. After this operation, 374 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:amd64. (Reading database ... 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[0mI: Copying back the cached apt archive contents[0m [0mI: new cache content 'meson_0.41.1-1_all.deb' added[0m [0mI: new cache content 'ninja-build_1.7.2-3_amd64.deb' added[0m [0mI: new cache content 'libundead-dev_1.0.6-2_amd64.deb' added[0m [0mI: new cache content 'ldc_1%3a1.2.0-1_amd64.deb' added[0m [0mI: new cache content 'libllvm3.9_1%3a3.9.1-10_amd64.deb' added[0m [0mI: new cache content 'libconfig9_1.5-0.3_amd64.deb' added[0m [0mI: new cache content 'libphobos2-ldc-dev_1%3a1.2.0-1_amd64.deb' added[0m [0mI: new cache content 'libphobos2-ldc72_1%3a1.2.0-1_amd64.deb' added[0m [0mI: new cache content 'debhelper_10.6.4_all.deb' added[0m [0mI: new cache content 'libedit2_3.1-20170329-1_amd64.deb' added[0m [0mI: new cache content 'libexpat1_2.2.2-1_amd64.deb' added[0m [0mI: Building the package[0m [0mI: Running cd /build/libbiod-0.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -rfakeroot[0m dpkg-buildpackage: info: source package libbiod dpkg-buildpackage: info: source version 0.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille <ti...@debian.org> dpkg-source --before-build libbiod-0.1.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/build/libbiod-0.1.0' rm -rf build/ dh_clean make[1]: Leaving directory '/build/libbiod-0.1.0' dpkg-source -b libbiod-0.1.0 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbiod using existing ./libbiod_0.1.0.orig.tar.gz dpkg-source: info: building libbiod in libbiod_0.1.0-3.debian.tar.xz dpkg-source: info: building libbiod in libbiod_0.1.0-3.dsc debian/rules build dh build dh_testdir dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libbiod-0.1.0' mkdir build (cd build && meson --prefix=/usr --buildtype=plain ..) WARNING: You are using 'ANSI_X3.4-1968' which is not a a Unicode-compatible locale. WARNING: You might see errors if you use UTF-8 strings as filenames, as strings, or as file contents. WARNING: Please switch to a UTF-8 locale for your platform. The Meson build system Version: 0.41.1 Source dir: /build/libbiod-0.1.0 Build dir: /build/libbiod-0.1.0/build Build type: native build Project name: BioD Native d compiler: ldc2 (llvm 1.2.0) Appending DFLAGS from environment: '-O -g -release' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Build machine cpu family: x86_64 Build machine cpu: x86_64 Found pkg-config: /usr/bin/pkg-config (0.29) Native dependency undead found: YES 1.0.6 Native dependency zlib found: YES 1.2.8 Build targets in project: 2 make[1]: Leaving directory '/build/libbiod-0.1.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/libbiod-0.1.0' ninja -Cbuild -v ninja: Entering directory `build' [1/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d [2/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 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-I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d [53/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_maf_parser.d.o' -c ../bio/maf/parser.d [54/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_sequence.d.o' -c ../bio/core/sequence.d [55/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d [56/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d [57/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d [58/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_index.d.o' -c ../bio/sff/index.d [59/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_call.d.o' -c ../bio/core/call.d [60/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d [61/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_constants.d.o' -c ../bio/sff/constants.d [62/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sff_read.d.o' -c ../bio/sff/read.d [63/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g 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[69/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_core_fasta.d.o' -c ../bio/core/fasta.d [70/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_tagvalue.d.o' -c ../bio/bam/tagvalue.d [71/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_reader.d.o' -c ../bio/sam/reader.d [72/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_core.d.o' -c ../bio/bam/md/core.d [73/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d [74/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_parse.d.o' -c ../bio/bam/md/parse.d [75/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_array.d.o' -c ../bio/bam/utils/array.d [76/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_validation_alignment.d.o' -c ../bio/bam/validation/alignment.d [77/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_value.d.o' -c ../bio/bam/utils/value.d [78/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_graph.d.o' -c ../bio/bam/utils/graph.d [79/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d [80/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_tinymap.d.o' -c ../bio/core/tinymap.d [81/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_md_operation.d.o' -c ../bio/bam/md/operation.d [82/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_baifile.d.o' -c ../bio/bam/baifile.d [83/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_readrange.d.o' -c ../bio/bam/readrange.d [84/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' -c ../bio/bam/iontorrent/flowindex.d [85/149] ldc2 -Ibiod@sha -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -relocation-model=pic -of 'biod@sha/bio_sam_header.d.o' -c ../bio/sam/header.d [86/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_splitter.d.o' -c ../bio/bam/splitter.d [87/149] ldc2 -of libbiod.so.0.1.0 'biod@sha/bio_bam_utils_value.d.o' 'biod@sha/bio_bam_utils_samheadermerger.d.o' 'biod@sha/bio_bam_utils_array.d.o' 'biod@sha/bio_bam_utils_graph.d.o' 'biod@sha/bio_bam_pileup.d.o' 'biod@sha/bio_bam_readrange.d.o' 'biod@sha/bio_bam_reader.d.o' 'biod@sha/bio_bam_thirdparty_msgpack.d.o' 'biod@sha/bio_bam_baifile.d.o' 'biod@sha/bio_bam_iontorrent_flowcall.d.o' 'biod@sha/bio_bam_iontorrent_flowindex.d.o' 'biod@sha/bio_bam_splitter.d.o' 'biod@sha/bio_bam_abstractreader.d.o' 'biod@sha/bio_bam_bai_indexing.d.o' 'biod@sha/bio_bam_bai_bin.d.o' 'biod@sha/bio_bam_multireader.d.o' 'biod@sha/bio_bam_reference.d.o' 'biod@sha/bio_bam_md_operation.d.o' 'biod@sha/bio_bam_md_core.d.o' 'biod@sha/bio_bam_md_parse.d.o' 'biod@sha/bio_bam_md_reconstruct.d.o' 'biod@sha/bio_bam_tagvalue.d.o' 'biod@sha/bio_bam_validation_alignment.d.o' 'biod@sha/bio_bam_validation_samheader.d.o' 'biod@sha/bio_bam_region.d.o' 'biod@sha/bio_bam_randomaccessmanager.d.o' 'biod@sha/bio_bam_referenceinfo.d.o' 'biod@sha/bio_bam_constants.d.o' 'biod@sha/bio_bam_snpcallers_maq.d.o' 'biod@sha/bio_bam_snpcallers_simple.d.o' 'biod@sha/bio_bam_read.d.o' 'biod@sha/bio_bam_writer.d.o' 'biod@sha/bio_bam_baseinfo.d.o' 'biod@sha/bio_maf_reader.d.o' 'biod@sha/bio_maf_parser.d.o' 'biod@sha/bio_maf_block.d.o' 'biod@sha/bio_core_utils_memoize.d.o' 'biod@sha/bio_core_utils_algo.d.o' 'biod@sha/bio_core_utils_stream.d.o' 'biod@sha/bio_core_utils_zlib.d.o' 'biod@sha/bio_core_utils_tmpfile.d.o' 'biod@sha/bio_core_utils_roundbuf.d.o' 'biod@sha/bio_core_utils_format.d.o' 'biod@sha/bio_core_utils_bylinefast.d.o' 'biod@sha/bio_core_utils_range.d.o' 'biod@sha/bio_core_utils_switchendianness.d.o' 'biod@sha/bio_core_utils_outbuffer.d.o' 'biod@sha/bio_core_genotype.d.o' 'biod@sha/bio_core_fasta.d.o' 'biod@sha/bio_core_base.d.o' 'biod@sha/bio_core_kmer.d.o' 'biod@sha/bio_core_region.d.o' 'biod@sha/bio_core_tinymap.d.o' 'biod@sha/bio_core_sequence.d.o' 'biod@sha/bio_core_bgzf_outputstream.d.o' 'biod@sha/bio_core_bgzf_chunk.d.o' 'biod@sha/bio_core_bgzf_inputstream.d.o' 'biod@sha/bio_core_bgzf_constants.d.o' 'biod@sha/bio_core_bgzf_block.d.o' 'biod@sha/bio_core_bgzf_virtualoffset.d.o' 'biod@sha/bio_core_bgzf_compress.d.o' 'biod@sha/bio_core_call.d.o' 'biod@sha/bio_sff_utils_roundup.d.o' 'biod@sha/bio_sff_index.d.o' 'biod@sha/bio_sff_readrange.d.o' 'biod@sha/bio_sff_reader.d.o' 'biod@sha/bio_sff_constants.d.o' 'biod@sha/bio_sff_read.d.o' 'biod@sha/bio_sff_writer.d.o' 'biod@sha/bio_sam_utils_fastrecordparser.d.o' 'biod@sha/bio_sam_utils_recordparser.d.o' 'biod@sha/bio_sam_reader.d.o' 'biod@sha/bio_sam_header.d.o' -L-rpath=/build/libbiod-0.1.0/build/ -shared -relocation-model=pic -L-soname -Llibbiod.so.0 -O -g -release -L-z 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-enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_reference.d.o' -c ../bio/bam/reference.d [94/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_validation_samheader.d.o' -c ../bio/bam/validation/samheader.d [95/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_region.d.o' -c ../bio/bam/region.d [96/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_constants.d.o' -c ../bio/bam/constants.d [97/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' -c ../bio/bam/utils/samheadermerger.d [98/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_bai_indexing.d.o' -c 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-g -release -unittest -of 'biod_test@exe/bio_bam_baseinfo.d.o' -c ../bio/bam/baseinfo.d [105/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_algo.d.o' -c ../bio/core/utils/algo.d [106/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_maf_reader.d.o' -c ../bio/maf/reader.d [107/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_zlib.d.o' -c ../bio/core/utils/zlib.d [108/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_writer.d.o' -c ../bio/bam/writer.d [109/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d [110/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_format.d.o' -c ../bio/core/utils/format.d [111/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_stream.d.o' -c ../bio/core/utils/stream.d [112/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' -c ../bio/bam/thirdparty/msgpack.d [113/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_switchendianness.d.o' -c ../bio/core/utils/switchendianness.d [114/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d [115/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d [116/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d [117/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_genotype.d.o' -c ../bio/core/genotype.d [118/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_maf_parser.d.o' -c ../bio/maf/parser.d [119/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_base.d.o' -c ../bio/core/base.d [120/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_region.d.o' -c ../bio/core/region.d [121/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_kmer.d.o' -c ../bio/core/kmer.d [122/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_chunk.d.o' -c ../bio/core/bgzf/chunk.d [123/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d [124/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d [125/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_utils_range.d.o' -c ../bio/core/utils/range.d [126/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_sequence.d.o' -c ../bio/core/sequence.d [127/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_block.d.o' -c ../bio/core/bgzf/block.d [128/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' -c ../bio/core/bgzf/virtualoffset.d [129/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_utils_roundup.d.o' -c ../bio/sff/utils/roundup.d [130/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d [131/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_index.d.o' -c ../bio/sff/index.d [132/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_call.d.o' -c ../bio/core/call.d [133/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_constants.d.o' -c ../bio/sff/constants.d [134/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_read.d.o' -c ../bio/sff/read.d [135/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d [136/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_reader.d.o' -c ../bio/sff/reader.d [137/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_readrange.d.o' -c ../bio/sff/readrange.d [138/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sff_writer.d.o' -c ../bio/sff/writer.d [139/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_randomaccessmanager.d.o' -c ../bio/bam/randomaccessmanager.d [140/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_fasta.d.o' -c ../bio/core/fasta.d [141/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_core_bgzf_outputstream.d.o' -c ../bio/core/bgzf/outputstream.d [142/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_read.d.o' -c ../bio/bam/read.d [143/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_bam_multireader.d.o' -c ../bio/bam/multireader.d [144/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_reader.d.o' -c ../bio/sam/reader.d [145/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_utils_recordparser.d.o' -c ../bio/sam/utils/recordparser.d [146/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_header.d.o' -c ../bio/sam/header.d [147/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' -c ../bio/sam/utils/fastrecordparser.d [148/149] ldc2 -Ibiod_test@exe -I. -I.. -I -I../ -I/usr/include/d/ -enable-color -O -g -release -unittest -of 'biod_test@exe/test_unittests.d.o' -c ../test/unittests.d [149/149] ldc2 -of biod_test 'biod_test@exe/test_unittests.d.o' 'biod_test@exe/bio_bam_utils_value.d.o' 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' 'biod_test@exe/bio_bam_utils_array.d.o' 'biod_test@exe/bio_bam_utils_graph.d.o' 'biod_test@exe/bio_bam_pileup.d.o' 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reader.d.o' 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' 'biod_test@exe/bio_bam_baifile.d.o' 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_abstractreader.d.o' 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_reference.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_parse.d.o' 'biod_test@exe/bio_bam_md_reconstruct.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' 'biod_test@exe/bio_bam_validation_alignment.d.o' 'biod_test@exe/bio_bam_validation_samheader.d.o' 'biod_test@exe/bio_bam_region.d.o' 'biod_test@exe/bio_bam_randomaccessmanager.d.o' 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_constants.d.o' 'biod_test@exe/bio_bam_snpcallers_maq.d.o' 'biod_test@exe/bio_bam_snpcallers_simple.d.o' 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' 'biod_test@exe/bio_maf_reader.d.o' 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_block.d.o' 'biod_test@exe/bio_core_utils_memoize.d.o' 'biod_test@exe/bio_core_utils_algo.d.o' 'biod_test@exe/bio_core_utils_stream.d.o' 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_core_utils_tmpfile.d.o' 'biod_test@exe/bio_core_utils_roundbuf.d.o' 'biod_test@exe/bio_core_utils_format.d.o' 'biod_test@exe/bio_core_utils_bylinefast.d.o' 'biod_test@exe/bio_core_utils_range.d.o' 'biod_test@exe/bio_core_utils_switchendianness.d.o' 'biod_test@exe/bio_core_utils_outbuffer.d.o' 'biod_test@exe/bio_core_genotype.d.o' 'biod_test@exe/bio_core_fasta.d.o' 'biod_test@exe/bio_core_base.d.o' 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' 'biod_test@exe/bio_core_tinymap.d.o' 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_bgzf_outputstream.d.o' 'biod_test@exe/bio_core_bgzf_chunk.d.o' 'biod_test@exe/bio_core_bgzf_inputstream.d.o' 'biod_test@exe/bio_core_bgzf_constants.d.o' 'biod_test@exe/bio_core_bgzf_block.d.o' 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' 'biod_test@exe/bio_core_bgzf_compress.d.o' 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_index.d.o' 'biod_test@exe/bio_sff_readrange.d.o' 'biod_test@exe/bio_sff_reader.d.o' 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_writer.d.o' 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' 'biod_test@exe/bio_sam_utils_recordparser.d.o' 'biod_test@exe/bio_sam_reader.d.o' 'biod_test@exe/bio_sam_header.d.o' -O -g -release -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz FAILED: biod_test ldc2 -of biod_test 'biod_test@exe/test_unittests.d.o' 'biod_test@exe/bio_bam_utils_value.d.o' 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' 'biod_test@exe/bio_bam_utils_array.d.o' 'biod_test@exe/bio_bam_utils_graph.d.o' 'biod_test@exe/bio_bam_pileup.d.o' 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reader.d.o' 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' 'biod_test@exe/bio_bam_baifile.d.o' 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_abstractreader.d.o' 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_reference.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_parse.d.o' 'biod_test@exe/bio_bam_md_reconstruct.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' 'biod_test@exe/bio_bam_validation_alignment.d.o' 'biod_test@exe/bio_bam_validation_samheader.d.o' 'biod_test@exe/bio_bam_region.d.o' 'biod_test@exe/bio_bam_randomaccessmanager.d.o' 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_constants.d.o' 'biod_test@exe/bio_bam_snpcallers_maq.d.o' 'biod_test@exe/bio_bam_snpcallers_simple.d.o' 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' 'biod_test@exe/bio_maf_reader.d.o' 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_block.d.o' 'biod_test@exe/bio_core_utils_memoize.d.o' 'biod_test@exe/bio_core_utils_algo.d.o' 'biod_test@exe/bio_core_utils_stream.d.o' 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_core_utils_tmpfile.d.o' 'biod_test@exe/bio_core_utils_roundbuf.d.o' 'biod_test@exe/bio_core_utils_format.d.o' 'biod_test@exe/bio_core_utils_bylinefast.d.o' 'biod_test@exe/bio_core_utils_range.d.o' 'biod_test@exe/bio_core_utils_switchendianness.d.o' 'biod_test@exe/bio_core_utils_outbuffer.d.o' 'biod_test@exe/bio_core_genotype.d.o' 'biod_test@exe/bio_core_fasta.d.o' 'biod_test@exe/bio_core_base.d.o' 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' 'biod_test@exe/bio_core_tinymap.d.o' 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_bgzf_outputstream.d.o' 'biod_test@exe/bio_core_bgzf_chunk.d.o' 'biod_test@exe/bio_core_bgzf_inputstream.d.o' 'biod_test@exe/bio_core_bgzf_constants.d.o' 'biod_test@exe/bio_core_bgzf_block.d.o' 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' 'biod_test@exe/bio_core_bgzf_compress.d.o' 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_index.d.o' 'biod_test@exe/bio_sff_readrange.d.o' 'biod_test@exe/bio_sff_reader.d.o' 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_writer.d.o' 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' 'biod_test@exe/bio_sam_utils_recordparser.d.o' 'biod_test@exe/bio_sam_reader.d.o' 'biod_test@exe/bio_sam_header.d.o' -O -g -release -L-z -Lrelro -L-z -Lnow -L-lundead -L-lz /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi': (.text._D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi[_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi]+0x11f2): undefined reference to `_D3std3utf7toUTF16FNaNfxAaZAyu' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi': (.text._D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi[_D6undead6stream6Stream6vreadfMFAC8TypeInfoPS6object13__va_list_tagZi]+0x1213): undefined reference to `_D3std3utf7toUTF32FNaNfxAaZAyw' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv]+0x540): undefined reference to `_D3std3utf6toUTF8FNaNfxAuZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZv]+0x5bf): undefined reference to `_D3std3utf6toUTF8FNaNfxAwZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv]+0x11a3): undefined reference to `_D3std3utf6toUTF8FNaNfxAwZAya' /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libundead.a(src_undead_stream.d.o): In function `_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv': (.text._D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv[_D6undead8doformat13__T8doFormatZ8doFormatFMDFwZvAC8TypeInfoPS6object13__va_list_tagZ9formatArgMFaZv]+0x128a): undefined reference to `_D3std3utf6toUTF8FNaNfxAuZAya' collect2: error: ld returned 1 exit status Error: /usr/bin/gcc failed with status: 1 ninja: build stopped: subcommand failed. debian/rules:20: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 1 make[1]: Leaving directory '/build/libbiod-0.1.0' debian/rules:13: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 [0mI: copying local configuration[0m [0;31mE: Failed autobuilding of package[0m [0mI: unmounting dev/pts filesystem[0m [0mI: unmounting dev/shm filesystem[0m [0mI: unmounting proc filesystem[0m [0mI: unmounting sys filesystem[0m [0mI: cleaning the build env [0m [0mI: removing directory /tmp/build/2177 and its subdirectories[0m
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