On 28 March 2017 at 10:09, Andreas Tille wrote:
| Package: r-cran-rcppgsl
| Version: 0.3.2-1
| Severity: grave
| Tags: patch
| Justification: renders package unusable
|
| [ Release team see below how to deal with newer upstream version in unstable
| than in testing ]
|
| Dear Maintainer,
|
| *** Reporter, please consider answering these questions, where appropriate ***
|
| * What led up to the situation?
|
| On a machine without any R packages:
|
| $ sudo apt-get install r-cran-rcppgsl
| $ echo "library(RcppGSL)" | LC_ALL=C R --no-save
|
| R version 3.3.3 (2017-03-06) -- "Another Canoe"
| Copyright (C) 2017 The R Foundation for Statistical Computing
| Platform: x86_64-pc-linux-gnu (64-bit)
|
| <... snip ...>
|
| > library(RcppGSL)
| sh: 1: gsl-config: not found
| Error : .onLoad failed in loadNamespace() for 'RcppGSL', details:
| call: system("gsl-config --cflags", intern = TRUE)
| error: error in running command
| Error: package or namespace load failed for 'RcppGSL'
| Execution halted
Ooops.
| * What exactly did you do (or not do) that was effective (or
| ineffective)?
|
| $ sudo apt-get install libgsl-dev
|
| * What was the outcome of this action?
|
| Problem fixed:
|
| $ echo "library(RcppGSL)" | LC_ALL=C R --no-save
|
| R version 3.3.3 (2017-03-06) -- "Another Canoe"
| Copyright (C) 2017 The R Foundation for Statistical Computing
| Platform: x86_64-pc-linux-gnu (64-bit)
|
| <... snip ...>
|
| > library(RcppGSL)
| >
|
| This can be fixed easily by the following patch:
|
| $ diff -u debian/control.old debian/control
| --- debian/control.old 2017-03-27 06:35:41.000000000 +0000
| +++ debian/control 2017-03-28 07:38:03.501032117 +0000
| @@ -11,7 +11,7 @@
|
| Package: r-cran-rcppgsl
| Architecture: any
| -Depends: ${R:Depends}, ${shlibs:Depends}, ${misc:Depends}
| +Depends: ${R:Depends}, ${shlibs:Depends}, ${misc:Depends}, libgsl-dev
Right.
| Recommends: ${R:Recommends}
| Suggests: ${R:Suggests}
| Description: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
|
|
| Alternatively this could be fixed by moving the script gsl-config from
| package libgsl-dev to libgsl2. Since you are the maintainer of both
I am wondering if it was in lbgsl0 before the move to 'gsl2'. I should check
that.
But the idea of relying on gsl-config is to compile against GSL from R, so I
think we need the -dev package either way.
I guess I'll make a quick fix.
Dirk
| packages this would be probably easy to do and may be this is the most
| straightforward solution anyway if it turns out that the script is not
| only needed for building packages against libgsl.
|
| This alternative solution would have another advantage: The problem is
| that you violated freeze policy and have uploaded a newer upstream
| version to unstable than it is currently in testing (which is affected
| by the problem as well). If you want to fix the issue inside
| r-cran-rcppgsl package you need to either convince the release team to
| accept this new upstream version or revert the new version by using an
| epoch. I have CCed the release team where you can get advise about the
| most favourable solution for this issue.
|
| Kind regards
|
| Andreas.
|
| -- System Information:
| Debian Release: 9.0
| APT prefers unstable
| APT policy: (500, 'unstable'), (1, 'experimental')
| Architecture: amd64 (x86_64)
|
| Kernel: Linux 4.9.0-0.bpo.2-amd64
| Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
| Shell: /bin/sh linked to /bin/dash
| Init: unable to detect
|
| Versions of packages r-cran-rcppgsl depends on:
| ii libc6 2.24-9
| ii libgcc1 1:6.3.0-10
| ii libgsl2 2.3+dfsg-1
| ii libstdc++6 6.3.0-10
| ii r-base-core [r-api-3] 3.3.3-1
| ii r-cran-rcpp 0.12.10-1
|
| r-cran-rcppgsl recommends no packages.
|
| r-cran-rcppgsl suggests no packages.
|
| -- no debconf information
--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
