I made a few changes in a branch off that security-bug-fixes branch that quieted several warning messages, though I still need to sort out at least one problem (the memory adaptor doesn't seem to be reading fasta files, but also doesn't emit a warning about a problem). Lincoln, if you want to look at this pull request, you could pull those changes into the security bug fix branch:
https://github.com/GMOD/GBrowse/pull/59 Scott On Thu, Jan 12, 2017 at 1:57 PM, Lincoln Stein <lincoln.st...@gmail.com> wrote: > Hi Andreas, > > I was able to remove the vast majority of the warnings and other > incompatibility issues, but need to do more testing to identify areas of > the code that were not covered. How much time do I have? If you want to go > with a fully functional version that may issue warnings when the user takes > certain rare actions, it is the "security-bug-fixes" branch at > https://github.com/GMOD/GBrowse > > Lincoln > > On Thu, Jan 12, 2017 at 1:39 PM, Andreas Tille <andr...@an3as.eu> wrote: > >> Hi Lincoln, >> >> On Wed, Dec 21, 2016 at 06:25:46PM -0500, Lincoln Stein wrote: >> > I am devoting several days over the Christmas holidays to fixing the >> > various outstanding bugs in gbrowse. Stay tuned! >> >> Did you managed to managed to work on this? If not we probably can not >> include gbrowse in the next Debian stable release which would be a >> shame. >> >> Kind regards >> >> Andreas. >> >> -- >> http://fam-tille.de >> > > > > -- > *Lincoln Stein* > > Scientific Director (Interim), Ontario Institute for Cancer Research > Director, Informatics and Bio-computing Program, OICR > Senior Principal Investigator, OICR > Professor, Department of Molecular Genetics, University of Toronto > > <http://goog_1828306398> > *Ontario Institute for Cancer Research* > MaRS Centre > 661 University Avenue > Suite 510 > Toronto, Ontario > Canada M5G 0A3 > > Tel: 416-673-8514 <(416)%20673-8514> > Mobile: 416-817-8240 <(416)%20817-8240> > Email: lincoln.st...@gmail.com > Toll-free: 1-866-678-6427 <(866)%20678-6427> > Twitter: @OICR_news > > *Executive Assistant* > *Frances Dirnbeck* > Tel: 647-259-4253 <(647)%20259-4253> > Email:frances.dirnb...@oicr.on.ca <stacey.qu...@oicr.on.ca> > www.oicr.on.ca > > This message and any attachments may contain confidential and/or > privileged information for the sole use of the intended recipient. Any > review or distribution by anyone other than the person for whom it was > originally intended is strictly prohibited. If you have received this > message in error, please contact the sender and delete all copies. > Opinions, conclusions or other information contained in this message may > not be that of the organization. > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research
