fixed 847922 1.7.2+dfsg.1-2 thanks
This bug is fixed with the transition of -2 to stretch. Best regards Alastair -------- Forwarded Message -------- Subject: Re: Fwd: Bug#847922: cdo in debian testing: Headers are 1.10.0 but library is 1.8.16 Date: Tue, 13 Dec 2016 16:24:17 +0100 From: Gilles Filippini <p...@debian.org> To: Alastair McKinstry <alastair.mckins...@sceal.ie> Le 2016-12-13 10:46, Gilles Filippini a écrit : > Hi Alastair, > > Le 2016-12-13 09:46, Alastair McKinstry a écrit : >> Hi Gilles, >> >> I'm investigating how this happened. Note the build was a +b1 build. >> Do we need to add a versioned depends on libhdf5-100 ? > > Looking at the hdf5 transition tracker [1], cdo is an hdf5 level 5 > r-dependency. It depends on magic++ and netcdf. Maybe it was binnmued > while some dependencies were still linked to hdf5-1.8.16. It's worth > checking magic++ and netfcdf, then requesting another binnmu. > > [1] https://release.debian.org/transitions/html/auto-hdf5.html I confirm what I said above: the cdo package in stretch still depends on libhdf5-10. It'll be fixed when cdo-1.7.2+dfsg.1-2 hit stretch, hopefully in about 5 days. Thanks, _g. >> -------- Forwarded Message -------- >> >> SUBJECT: >> Bug#847922: cdo in debian testing: Headers are 1.10.0 but >> library >> is 1.8.16 >> >> RESENT-DATE: >> Mon, 12 Dec 2016 11:51:07 +0000 >> >> RESENT-FROM: >> Ramiro Checa <ayubu.zimb...@gmail.com> >> >> RESENT-TO: >> debian-bugs-dist@lists.debian.org >> >> RESENT-CC: >> Alastair McKinstry <mckins...@debian.org> >> >> DATE: >> Mon, 12 Dec 2016 11:50:22 +0000 >> >> FROM: >> Ramiro Checa <ayubu.zimb...@gmail.com> >> >> REPLY-TO: >> Ramiro Checa <ayubu.zimb...@gmail.com>, 847...@bugs.debian.org >> >> TO: >> sub...@bugs.debian.org >> >> Subject: cdo in debian testing: Headers are 1.10.0 but library is >> 1.8.16 >> Package: cdo >> Version: 1.7.2+dfsg.1-1+b1 >> Severity: important >> >> Dear Maintainer, >> >> I found the following problem in Debian Testing (I check that I have >> the last version with apt-get) >> >> The cdo in Debian Testing (in particular I tested cdo remapbil) >> produces: >> >> ------------------------------------------------------------------------------- >> >> The HDF5 header files used to compile this application do not match >> the version used by the HDF5 library to which this application is >> linked. >> Data corruption or segmentation faults may occur if the application >> continues. >> This can happen when an application was compiled by one version of >> HDF5 but >> linked with a different version of static or shared HDF5 library. >> You should recompile the application or check your shared library >> related >> settings such as 'LD_LIBRARY_PATH'. >> 'HDF5_DISABLE_VERSION_CHECK' environment variable is set to 1, >> application will >> continue at your own risk. >> Headers are 1.10.0, library is 1.8.16 >> ------------------------------------------------------------------------------- >> >> >> After, >>> export HDF5_DISABLE_VERSION_CHECK=1 >> >> the cdo library produces a "segmentation fault" and apparently it is >> not >> possible to use it. >> >> After checking the web-page: >> >> https://support.hdfgroup.org/HDF5/doc/ADGuide/Compatibility_Report/CR_1.10.0.html >> [1] >> >> it seems to be that HDF5 libraries 1.10.0 and 1.8.16 are not full >> compatible. >> Maybe a solution will be compile the package with the new HDF5 >> libraries 1.10.0 >> already included in Debian Testing. >> >> Thanks, >> Ramiro, >> >> -- System Information: >> Debian Release: stretch/sid >> APT prefers testing >> APT policy: (500, 'testing') >> Architecture: amd64 (x86_64) >> >> Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores) >> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) >> Shell: /bin/sh linked to /bin/dash >> Init: systemd (via /run/systemd/system) >> >> Versions of packages cdo depends on: >> ii libc6 2.24-7 >> ii libcdi0 1.7.2+dfsg.1-1+b1 >> ii libcurl3-gnutls 7.50.1-1 >> ii libfftw3-double3 3.3.5-1 >> ii libgomp1 6.2.1-5 >> ii libhdf5-10 1.8.16+docs-8+b1 >> ii libmagplus3v5 2.29.6-2 >> ii libnetcdf11 1:4.4.1.1-1+b1 >> ii libproj12 4.9.3-1 >> ii libudunits2-0 2.2.20-1 >> >> cdo recommends no packages. >> >> cdo suggests no packages. >> >> -- no debconf information >> >> >> >> Links: >> ------ >> [1] >> https://support.hdfgroup.org/HDF5/doc/ADGuide/Compatibility_Report/CR_1.10.0.html
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