This seems to be an upstream issue:
https://sourceforge.net/p/enigmail/forum/support/thread/e6db078d/?limit=25#c038

I had the same problem on Arch Linux.

Jonas

On Mon, 14 Nov 2016 21:11:28 +0100 Paul Gevers <elb...@debian.org> wrote:
> Package: enigmail
> Version: 2:1.9.6-1
> Severity: important
> 
> On my up-to-date stretch setup, enigmail was suddendly broken today. Suddenly
> enigmail shows me a pop-up:
> 
> Enigmail: Error in accessing Enigmail service In order to use Enigmail, GnuPG 
> is required. If you did not install GnuPG yet, the easiest way to do this is 
> using the "Setup Wizard" button below.
> 
> When I follow the wizard, taking the default answers, it ends with:
> 
> Enigmail requires GnuPG for doing the cryptographic work. The wizard tried to 
> locate the GnuPG executable, but it could not be found.
> Please locate GnuPG using the Browse button.
> 
> When I point it at either gpg or gpg2 it complains:
> The file you specified is not a GnuPG executable. Please specify a different 
> file.
> 
> Please let me know if you need more info.
> 
> Paul
> 
> -- System Information:
> Debian Release: stretch/sid
>   APT prefers testing
>   APT policy: (500, 'testing')
> Architecture: amd64 (x86_64)
> 
> Kernel: Linux 4.7.0-1-amd64 (SMP w/2 CPU cores)
> Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
> 
> Versions of packages enigmail depends on:
> ii  gnupg        2.1.15-4
> ii  gnupg-agent  2.1.15-4
> ii  gnupg2       2.1.15-4
> ii  icedove      1:45.4.0-1
> 
> Versions of packages enigmail recommends:
> ii  pinentry-gnome3 [pinentry-x11]  0.9.7-6
> ii  pinentry-qt [pinentry-x11]      0.9.7-6
> 
> enigmail suggests no packages.
> 
> -- no debconf information
> 
> 

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