Package: vcftools Version: 0.1.14+dfsg-3 Severity: normal Hi,
I noticed in Ubuntu, where we run autopkgtests as part of britney migration, that vcftools fails now. You can see on ci.debian.net[0] > not ok 26 - Testing vcf-fix-ploidy .. cat fix-ploidy.vcf | perl -I../. -MVcf > /usr/bin/vcf-fix-ploidy -s fix-ploidy.samples -p fix-ploidy.txt 2>/dev/null | > vcf-query -f '%POS[\t%SAMPLE %GTR %PL]\n' > # Failed test 'Testing vcf-fix-ploidy .. cat fix-ploidy.vcf | perl -I../. > -MVcf /usr/bin/vcf-fix-ploidy -s fix-ploidy.samples -p fix-ploidy.txt > 2>/dev/null | vcf-query -f '%POS[\t%SAMPLE %GTR %PL]\n'' > # at ./test.t line 452. > # Structures begin differing at: > # $got->[0] = '61098 M1 0/1 0,9,72,5,6,7 M2 0/0 0,15,140,5,6,7 > F3 1 147,0,5 F4 0 0,131,5 M5 0/0 0,9,83,5,6,7 M6 0/0 0,6,56,5,6,7 > # ' > # $expected->[0] = '61098 M1 0 0,9,72,5,6,7 M2 0 0,15,140,5,6,7 > F3 1/1 147,0,5 F4 0/0 0,131,5 M5 0 0,9,83,5,6,7 M6 0 0,6,56,5,6,7 > # ' Any ideas? Cheers, -- Iain Lane [ i...@orangesquash.org.uk ] Debian Developer [ la...@debian.org ] Ubuntu Developer [ la...@ubuntu.com ] [0] https://ci.debian.net/data/packages/unstable/amd64/v/vcftools/20161028_112724.autopkgtest.log.gz
