Package: libfast5-dev
Version: 0~20150918-1
Severity: important
Tags: patch
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Hash: SHA256
Hi,
Subject says it all.
This bug doesn't affect unstable currently because hid_t = int in hdf5 1.8.x.
But it breaks with hdf5 1.10 in experimental, where hid_t = long long.
PLease see the attached patch.
Thank,
_g.
- -- System Information:
Debian Release: stretch/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.6.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages libfast5-dev depends on:
ii libhdf5-dev 1.8.16+docs-8
ii libhdf5-openmpi-dev 1.8.16+docs-8
libfast5-dev recommends no packages.
libfast5-dev suggests no packages.
- -- no debconf information
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diff -Nru fast5-0~20150918/debian/changelog fast5-0~20150918/debian/changelog
--- fast5-0~20150918/debian/changelog 2016-01-20 11:11:22.000000000 +0100
+++ fast5-0~20150918/debian/changelog 2016-07-21 17:12:12.000000000 +0200
@@ -1,3 +1,11 @@
+fast5 (0~20150918-1.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix wrong id type: should be hid_t instead of int, for hdf5 1.10
+ compatibility.
+
+ -- Gilles Filippini <p...@debian.org> Thu, 21 Jul 2016 17:06:57 +0200
+
fast5 (0~20150918-1) unstable; urgency=low
* Initial release - upstream git revision 0639cc5 (Closes: #811460)
diff -Nru fast5-0~20150918/debian/patches/fix-id-type.patch fast5-0~20150918/debian/patches/fix-id-type.patch
--- fast5-0~20150918/debian/patches/fix-id-type.patch 1970-01-01 01:00:00.000000000 +0100
+++ fast5-0~20150918/debian/patches/fix-id-type.patch 2016-07-21 17:09:43.000000000 +0200
@@ -0,0 +1,13 @@
+Index: fast5-0~20150918/src/hdf5_tools.hpp
+===================================================================
+--- fast5-0~20150918.orig/src/hdf5_tools.hpp
++++ fast5-0~20150918/src/hdf5_tools.hpp
+@@ -218,7 +218,7 @@ struct Extent_Atomic_Reader< std::string
+ const std::string& read_fcn_name, std::function< herr_t(hid_t, hid_t, void*) > read_fcn)
+ {
+ int status;
+- int file_type_id = get_type_fcn(obj_id);
++ hid_t file_type_id = get_type_fcn(obj_id);
+ if (file_type_id < 0) throw Exception(loc_full_name + ": error in " + get_type_fcn_name);
+ int is_vlen_str = H5Tis_variable_str(file_type_id);
+ if (is_vlen_str < 0) throw Exception(loc_full_name + ": error in H5Tis_variable_str");
diff -Nru fast5-0~20150918/debian/patches/series fast5-0~20150918/debian/patches/series
--- fast5-0~20150918/debian/patches/series 2016-01-20 11:11:22.000000000 +0100
+++ fast5-0~20150918/debian/patches/series 2016-07-21 17:09:09.000000000 +0200
@@ -1,2 +1,3 @@
relative-paths.patch
revise-example.patch
+fix-id-type.patch
