Package: src:python-biom-format
Version: 2.1.5+dfsg-1
User: sanv...@debian.org
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with python2,python3,bash-completion --buildsystem=pybuild
dh_testdir -i -O--buildsystem=pybuild
dh_update_autotools_config -i -O--buildsystem=pybuild
dh_auto_configure -i -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 2.7 --dir .
I: pybuild base:184: python2.7 setup.py config
running config
pybuild --configure --test-nose -i python{version} -p 3.5 --dir .
I: pybuild base:184: python3.5 setup.py config
running config
debian/rules override_dh_auto_build-indep
[... snipped ...]
======================================================================
ERROR: Failure: ImportError (No module named biom.parse)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_parse.py",
line 19, in <module>
from biom.parse import generatedby, MetadataMap, parse_biom_table, parse_uc
ImportError: No module named biom.parse
======================================================================
ERROR: Failure: ImportError (No module named biom)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_table.py",
line 23, in <module>
from biom import example_table
ImportError: No module named biom
======================================================================
ERROR: Failure: ImportError (No module named biom.table)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_util.py",
line 20, in <module>
from biom.table import Table
ImportError: No module named biom.table
----------------------------------------------------------------------
Ran 11 tests in 0.002s
FAILED (errors=11)
E: pybuild pybuild:274: test: plugin distutils failed with: exit code=1: cd
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build;
python2.7 -m nose tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 --dir .
returned exit code 13
debian/rules:14: recipe for target 'build-indep' failed
make: *** [build-indep] Error 25
dpkg-buildpackage: error: debian/rules build-indep gave error exit status 2
--------------------------------------------------------------------------------
To reproduce, please build the package with "dpkg-buildpackage -A".
That should create python-biom-format-doc_2.1.5+dfsg-1_all.deb
and only such package.
Thanks.
