Package: salmon Version: 0.4.2+ds1-2 Severity: serious This package fails to build in unstable:
> sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux ... > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp: In function > 'void sampleRound_(std::vector<std::pair<const TranscriptGroup, TGValue> >&, > std::vector<int>&, std::vector<double>&, double, std::vector<int>&, > MultinomialSampler&)': > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/CollapsedGibbsSampler.cpp:119:18: warning: > unused variable 'classCount' [-Wunused-variable] > uint64_t classCount = eqClass.second.count; > ^ > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp: In function 'void > mem_collect_intv(const SalmonOpts&, const mem_opt_t*, const bwt_t*, int, > const uint8_t*, smem_aux_t*)': > /<<BUILDDIR>>/salmon-0.4.2+ds1/src/SalmonQuantify.cpp:159:36: error: > 'MEM_F_SELF_OVLP' was not declared in this scope > int start_width = (opt->flag & MEM_F_SELF_OVLP)? 2 : 1; -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
