Source: python-biom-format
Version: 2.1+dfsg-1
Severity: serious
Justification: fails to build from source
Tags: sid stretch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
The package fails to build:
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/python-biom-format-2.1+dfsg'
USE_CYTHON=true dh_auto_build
I: pybuild base:170: /usr/bin/python setup.py build
Error compiling Cython file:
------------------------------------------------------------
...
offset += end - start
offset_rows += 1
arr.data = data[:nnz]
arr.indices = indices[:nnz]
arr.indptr = indptr[:m-offset_rows+1]
arr._shape = (m - offset_rows, n) if m-offset_rows else (0, 0)
^
------------------------------------------------------------
biom/_filter.pyx:87:17: Incompatible types in conditional expression
((Py_ssize_t, Py_ssize_t); (long, long))
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
Traceback (most recent call last):
File "setup.py", line 80, in <module>
extensions = cythonize(extensions)
File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line
877, in cythonize
cythonize_one(*args)
File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line
997, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: biom/_filter.pyx
E: pybuild pybuild:262: build: plugin distutils failed with: exit code=1:
/usr/bin/python setup.py build
dh_auto_build: pybuild --build -i python{version} -p 2.7 --dir . returned exit
code 13
debian/rules:23: recipe for target 'override_dh_auto_build' failed
Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/python-biom-format.html
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
