Hi Andreas, this is what I got: https://anonscm.debian.org/cgit/users/tomasz/mothur.git
I didn't know how to use the current packaging repo, so I recreated gbp repo from the scratch. Please point me to how I should reapply my changes in the official repo. Anyway, it seems to build fine, I fixed/improved many things, hopefully without breaking anything. It takes ages to compile (since two builds are necessary!), so I also documented the use of ccache. There are 11 patches in the queue now: we should really push at least some of them upstream. Please review/comment. Cheers, Tomasz
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