Source: bowtie Version: 1.1.1-2 Severity: normal Tags: patch User: debian-powe...@lists.debian.org
Dear Maintainer, Please enable this package to build on ppc64el. I have already made a patch, attached, that includes ppc64el in Makefile and debian/control files. Thanks. -- System Information: Debian Release: 8.0 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'unstable'), (500, 'stable') Architecture: ppc64el (ppc64le) Kernel: Linux 3.16.0-4-powerpc64le (SMP w/8 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
diff -Nru bowtie-1.1.1/debian/changelog bowtie-1.1.1/debian/changelog --- bowtie-1.1.1/debian/changelog 2015-02-02 20:45:22.000000000 -0500 +++ bowtie-1.1.1/debian/changelog 2015-06-12 09:31:38.000000000 -0400 @@ -1,3 +1,9 @@ +bowtie (1.1.1-2ppc64el1) UNRELEASED; urgency=medium + + * Enabling ppc64el on Makefile and debian/control. + + -- Fernando Seiti Furusato <ferse...@br.ibm.com> Fri, 12 Jun 2015 09:30:20 -0400 + bowtie (1.1.1-2) unstable; urgency=high * Team upload. diff -Nru bowtie-1.1.1/debian/control bowtie-1.1.1/debian/control --- bowtie-1.1.1/debian/control 2014-10-06 12:54:05.000000000 -0400 +++ bowtie-1.1.1/debian/control 2015-06-12 09:31:27.000000000 -0400 @@ -16,7 +16,7 @@ Homepage: http://bowtie-bio.sourceforge.net/ Package: bowtie -Architecture: amd64 kfreebsd-amd64 +Architecture: amd64 kfreebsd-amd64 ppc64el Depends: ${shlibs:Depends}, ${misc:Depends}, python diff -Nru bowtie-1.1.1/debian/patches/ppc64el.patch bowtie-1.1.1/debian/patches/ppc64el.patch --- bowtie-1.1.1/debian/patches/ppc64el.patch 1969-12-31 19:00:00.000000000 -0500 +++ bowtie-1.1.1/debian/patches/ppc64el.patch 2015-06-12 09:30:15.000000000 -0400 @@ -0,0 +1,48 @@ +Index: bowtie-1.1.1/Makefile +=================================================================== +--- bowtie-1.1.1.orig/Makefile ++++ bowtie-1.1.1/Makefile +@@ -4,7 +4,7 @@ + + SEQAN_DIR = /usr/include/seqan + SEQAN_INC = -I $(SEQAN_DIR) +-INC = $(SEQAN_INC) -I third_party ++INC = $(SEQAN_INC) + CPP = g++ + CXX = $(CPP) + CC = gcc +@@ -42,7 +42,7 @@ ifneq (,$(findstring Darwin,$(shell unam + MACOS = 1 + endif + +-ifneq (,$(findstring 13,$(shell uname -r))) ++ifneq (,$(findstring 12,$(shell uname -r))) + CPP = clang++ + CC = clang + EXTRA_FLAGS += -stdlib=libstdc++ +@@ -75,11 +75,11 @@ else + PTHREAD_LIB = -lpthread + endif + +-POPCNT_CAPABILITY ?= 1 +-ifeq (1, $(POPCNT_CAPABILITY)) +- EXTRA_FLAGS += -DPOPCNT_CAPABILITY +- INC += -I third_party +-endif ++#POPCNT_CAPABILITY ?= 1 ++#ifeq (1, $(POPCNT_CAPABILITY)) ++# EXTRA_FLAGS += -DPOPCNT_CAPABILITY ++# INC += -I third_party ++#endif + + PREFETCH_LOCALITY = 2 + PREF_DEF = -DPREFETCH_LOCALITY=$(PREFETCH_LOCALITY) +@@ -108,7 +108,7 @@ SEARCH_FRAGMENTS = $(wildcard search_*_p + VERSION = $(shell cat VERSION) + + BITS=32 +-ifeq (x86_64,$(shell uname -m)) ++ifneq (,$(filter $(shell uname -m), ppc64le x86_64)) + BITS=64 + endif + # msys will always be 32 bit so look at the cpu arch instead. diff -Nru bowtie-1.1.1/debian/patches/series bowtie-1.1.1/debian/patches/series --- bowtie-1.1.1/debian/patches/series 2014-10-06 12:54:05.000000000 -0400 +++ bowtie-1.1.1/debian/patches/series 2015-06-12 09:26:40.000000000 -0400 @@ -8,3 +8,4 @@ seqan-popcount.patch # do_not_use_outdated_copy_of_cpuid_h.patch bowtie_ContextLss-1.1-1.4.patch +ppc64el.patch
