and please pardon in the best traditions forgotten to be attached patch. Now it should be
-- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik
diff -Nru python-mne-0.8.4+dfsg/debian/changelog
python-mne-0.8.6+dfsg/debian/changelog
--- python-mne-0.8.4+dfsg/debian/changelog 2014-09-24 08:22:55.000000000
-0400
+++ python-mne-0.8.6+dfsg/debian/changelog 2014-12-11 17:02:51.000000000
-0500
@@ -1,3 +1,18 @@
+python-mne (0.8.6+dfsg-2) unstable; urgency=medium
+
+ * debian/{rules.patches/changeset_b9d4d*}
+ Absorb upstream patch and specify not using HOME directory for generated
+ pre-computed data, but instead use tempdir. (Closes: #768730)
+
+ -- Yaroslav Halchenko <deb...@onerussian.com> Thu, 11 Dec 2014 09:33:18 -0500
+
+python-mne (0.8.6+dfsg-1) unstable; urgency=low
+
+ * New upstream version
+ * remove dependency on d3
+
+ -- Alexandre Gramfort <alexandre.gramf...@m4x.org> Sat, 25 Oct 2014 16:09:07
-0400
+
python-mne (0.8.4+dfsg-1) unstable; urgency=low
[ Alexandre Gramfort ]
diff -Nru python-mne-0.8.4+dfsg/debian/control
python-mne-0.8.6+dfsg/debian/control
--- python-mne-0.8.4+dfsg/debian/control 2014-09-24 08:22:55.000000000
-0400
+++ python-mne-0.8.6+dfsg/debian/control 2014-12-11 17:02:51.000000000
-0500
@@ -43,7 +43,6 @@
xauth,
libgl1-mesa-dri,
help2man,
- libjs-d3,
libjs-jquery,
libjs-jquery-ui,
Recommends: python-nose,
diff -Nru
python-mne-0.8.4+dfsg/debian/patches/changeset_b9d4df78db7aaeda1feb58c18b0071934de2361e.diff
python-mne-0.8.6+dfsg/debian/patches/changeset_b9d4df78db7aaeda1feb58c18b0071934de2361e.diff
---
python-mne-0.8.4+dfsg/debian/patches/changeset_b9d4df78db7aaeda1feb58c18b0071934de2361e.diff
1969-12-31 19:00:00.000000000 -0500
+++
python-mne-0.8.6+dfsg/debian/patches/changeset_b9d4df78db7aaeda1feb58c18b0071934de2361e.diff
2014-12-11 17:02:51.000000000 -0500
@@ -0,0 +1,46 @@
+commit b9d4df78db7aaeda1feb58c18b0071934de2361e
+Author: Eric89GXL <larson.eri...@gmail.com>
+Date: Wed Nov 12 10:22:45 2014 -0800
+
+ ENH: Allow not writing home
+
+--- a/mne/utils.py
++++ b/mne/utils.py
+@@ -24,6 +24,8 @@ from math import log, ceil
+ import json
+ import ftplib
+ import hashlib
++from functools import partial
++import atexit
+
+ import numpy as np
+ import scipy
+@@ -983,8 +985,12 @@ def get_subjects_dir(subjects_dir=None,
+ return subjects_dir
+
+
++_temp_home_dir = None
++
++
+ def _get_extra_data_path(home_dir=None):
+ """Get path to extra data (config, tables, etc.)"""
++ global _temp_home_dir
+ if home_dir is None:
+ # this has been checked on OSX64, Linux64, and Win32
+ if 'nt' == os.name.lower():
+@@ -996,7 +1002,14 @@ def _get_extra_data_path(home_dir=None):
+ # of script that isn't launched via the command line (e.g. a
script
+ # launched via Upstart) then the HOME environment variable will
+ # not be set.
+- home_dir = os.path.expanduser('~')
++ if os.getenv('MNE_DONTWRITE_HOME', '') == 'true':
++ if _temp_home_dir is None:
++ _temp_home_dir = tempfile.mkdtemp()
++ atexit.register(partial(shutil.rmtree, _temp_home_dir,
++ ignore_errors=True))
++ home_dir = _temp_home_dir
++ else:
++ home_dir = os.path.expanduser('~')
+
+ if home_dir is None:
+ raise ValueError('mne-python config file path could '
diff -Nru python-mne-0.8.4+dfsg/debian/patches/series
python-mne-0.8.6+dfsg/debian/patches/series
--- python-mne-0.8.4+dfsg/debian/patches/series 2014-09-24 08:22:55.000000000
-0400
+++ python-mne-0.8.6+dfsg/debian/patches/series 2014-12-11 17:02:51.000000000
-0500
@@ -1,2 +1,3 @@
+changeset_b9d4df78db7aaeda1feb58c18b0071934de2361e.diff
changeset_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff
debian_paths
diff -Nru python-mne-0.8.4+dfsg/debian/rules python-mne-0.8.6+dfsg/debian/rules
--- python-mne-0.8.4+dfsg/debian/rules 2014-09-24 08:22:55.000000000 -0400
+++ python-mne-0.8.6+dfsg/debian/rules 2014-12-11 17:02:51.000000000 -0500
@@ -15,7 +15,7 @@
yui-compressor debian/JS/bootstrap/bootstrap.js >
$(CURDIR)/mne/html/bootstrap.min.js
override_dh_auto_test:
- MNE_SKIP_SAMPLE_DATASET_TESTS=true MNE_FORCE_SERIAL=true
MNE_SKIP_NETWORK_TESTS=1 \
+ MNE_DONTWRITE_HOME=true MNE_SKIP_SAMPLE_DATASET_TESTS=true
MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TESTS=1 \
xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24
-ac +extension GLX +render -noreset" \
$(NOSETESTS) mne
diff -Nru python-mne-0.8.4+dfsg/doc/source/whats_new.rst
python-mne-0.8.6+dfsg/doc/source/whats_new.rst
--- python-mne-0.8.4+dfsg/doc/source/whats_new.rst 2014-09-23
06:50:15.000000000 -0400
+++ python-mne-0.8.6+dfsg/doc/source/whats_new.rst 2014-10-16
14:18:25.000000000 -0400
@@ -143,7 +143,7 @@
- Deprecate Epochs.drop_picks in favor of a new method called drop_channels
- - Deprecate `labels_from_parc` and `parc_from_labels` in favor of
`read_annot` and `write_annot`
+ - Deprecate `labels_from_parc` and `parc_from_labels` in favor of
`read_labels_from_annot` and `write_labels_to_annot`
- The default of the new add_dist option of `setup_source_space` to add
patch information will change from False to True in MNE-Python 0.9
diff -Nru python-mne-0.8.4+dfsg/MANIFEST.in python-mne-0.8.6+dfsg/MANIFEST.in
--- python-mne-0.8.4+dfsg/MANIFEST.in 2014-09-23 06:50:15.000000000 -0400
+++ python-mne-0.8.6+dfsg/MANIFEST.in 2014-10-16 14:18:25.000000000 -0400
@@ -9,7 +9,12 @@
recursive-include mne/data *.fif.gz
recursive-include mne/layouts *.lout
recursive-include mne/layouts *.lay
+recursive-include mne/html *.js
+recursive-include mne/html *.css
recursive-exclude examples/MNE-sample-data *
+recursive-exclude examples/MNE-testing-data *
+recursive-exclude examples/MNE-spm-face *
+recursive-exclude examples/MNE-somato-data *
# recursive-include mne/fiff/tests/data *
recursive-exclude mne/fiff/tests/data *
recursive-exclude mne/fiff/bti/tests/data *
diff -Nru python-mne-0.8.4+dfsg/mne/coreg.py python-mne-0.8.6+dfsg/mne/coreg.py
--- python-mne-0.8.4+dfsg/mne/coreg.py 2014-09-23 06:50:15.000000000 -0400
+++ python-mne-0.8.6+dfsg/mne/coreg.py 2014-10-16 14:18:25.000000000 -0400
@@ -1150,6 +1150,7 @@
if add_dist:
logger.info("Recomputing distances, this might take a while")
- add_source_space_distances(sss, sss[0]['dist_limit'], n_jobs)
+ dist_limit = np.asscalar(sss[0]['dist_limit'])
+ add_source_space_distances(sss, dist_limit, n_jobs)
write_source_spaces(dst, sss)
diff -Nru python-mne-0.8.4+dfsg/mne/__init__.py
python-mne-0.8.6+dfsg/mne/__init__.py
--- python-mne-0.8.4+dfsg/mne/__init__.py 2014-09-23 06:50:15.000000000
-0400
+++ python-mne-0.8.6+dfsg/mne/__init__.py 2014-10-16 14:18:25.000000000
-0400
@@ -1,7 +1,7 @@
"""MNE for MEG and EEG data analysis
"""
-__version__ = '0.8.4'
+__version__ = '0.8.6'
# have to import verbose first since it's needed by many things
from .utils import (set_log_level, set_log_file, verbose, set_config,
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