Source: htslib
Version: 1.1-1
The code looks like this:
faidx_t *fai_build_core(BGZF *bgzf)
{
char c, *name;
...
while ( (c=bgzf_getc(bgzf))>=0 ) {
Clearly on architectures where plain char is unsigned (arm64, armhf,
...) this won't work (infinite loop).
I'd suggest changing the type of c from char to int, which is the return
type of bgzf_getc.
This bug is apparently the cause of samtools failing to build:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=762647
I can't take credit for identifying the issue as domibel seems to have
announced it here on Oct 2:
http://github.com/samtools/samtools/issues/304
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