I have turned colins patch into a NMU and uploaded to delayed/5. Debdiff attatched.

I did not implement doko's suggestion of a full autoreconf because it has higher potential for causing regressions on existing architectures and it does not appear to actually be needed (the package built successfully on ppc64el already).
diff -Nru fuseiso-20070708/debian/changelog fuseiso-20070708/debian/changelog
--- fuseiso-20070708/debian/changelog   2012-12-25 07:47:27.000000000 +0000
+++ fuseiso-20070708/debian/changelog   2014-10-02 00:55:59.000000000 +0000
@@ -1,3 +1,12 @@
+fuseiso (20070708-3.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  [Colin Watson]
+  * Use the autotools-dev dh addon to update config.guess/config.sub for new
+    ports. (Closes: #727828)
+
+ -- Peter Michael Green <plugw...@debian.org>  Thu, 02 Oct 2014 00:46:49 +0000
+
 fuseiso (20070708-3) unstable; urgency=low
 
   * Renamed dependency from fuse-utils to fuse (Closes: #689009)
diff -Nru fuseiso-20070708/debian/rules fuseiso-20070708/debian/rules
--- fuseiso-20070708/debian/rules       2012-12-25 07:47:27.000000000 +0000
+++ fuseiso-20070708/debian/rules       2014-10-02 00:48:30.000000000 +0000
@@ -7,4 +7,4 @@
 export LDFLAGS=-Wl,-z,defs
 
 %:
-       dh $@
+       dh $@ --with autotools_dev

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