Hello, the Debian Med team has packaged your program idba for Debian. Currently there is an effort in Debian to build the distribution with the clang compiler that is a bit more strict about syntax. A patch was provided to solve this problem which can be found here:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/idba/trunk/debian/patches/clang.patch?view=markup BTW, we also have applied another patch for some architectures. Fell free to apply also this http://anonscm.debian.org/viewvc/debian-med/trunk/packages/idba/trunk/debian/patches/use-atomic-for-mips.patch?view=markup to your code (I forgot whether I just reported this to you - sorry if it is a duplicate). Finally our sanity check has found a misspelling: I: idba: spelling-error-in-binary usr/bin/idba_hybrid unkown unknown What I'm also wondering is: You are providing a test directory which unfortunately only contains an empty Makefile.am (and the according Makefile.in). We would be really interested to run some unit tests to prove the proper function of idba. Kind regards and thanks for providing idba as free software Andreas. On Thu, Jun 19, 2014 at 05:12:39PM -0400, Alexander Ovchinnikov wrote: > Package: idba > Severity: minor > Tags: patch > User: pkg-llvm-t...@lists.alioth.debian.org > Usertags: clang-ftbfs > > Hello, > > Using the rebuild infrastructure, your package fails to build with clang > (instead of gcc). > > We detected this kinf of error: > http://clang.debian.net/status.php?version=3.4.2&key=NON-POD > > Full build log is available here: > http://clang.debian.net/logs/2014-06-16/idba_1.1.1-2_unstable_clang.log > > Thanks, > Alexander > > -- System Information: > Debian Release: jessie/sid > APT prefers unstable > APT policy: (500, 'unstable') > Architecture: amd64 (x86_64) > > Kernel: Linux 3.13-1-amd64 (SMP w/1 CPU core) > Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) > Shell: /bin/sh linked to /bin/dash > --- idba-1.1.1/src/tools/parallel_rna_blat.cpp 2013-07-23 > 14:27:57.000000000 -0400 > +++ idba-1.1.1-my/src/tools/parallel_rna_blat.cpp 2014-06-19 > 17:08:02.373666423 -0400 > @@ -61,7 +61,7 @@ > > void SplitSequenceFile() > { > - FastaWriter writers[num_threads]; > + FastaWriter *writers = static_cast<FastaWriter > *>(alloca(sizeof(FastaWriter) * num_threads)); > for (int i = 0; i < num_threads; ++i) > writers[i].Open(split_files[i]); > > --- idba-1.1.1/src/release/parallel_blat.cpp 2013-07-23 14:27:57.000000000 > -0400 > +++ idba-1.1.1-my/src/release/parallel_blat.cpp 2014-06-19 > 17:09:06.758253507 -0400 > @@ -61,7 +61,7 @@ > > void SplitSequenceFile() > { > - FastaWriter writers[num_threads]; > + FastaWriter *writers = static_cast<FastaWriter > *>(alloca(sizeof(FastaWriter) * num_threads)); > for (int i = 0; i < num_threads; ++i) > writers[i].Open(split_files[i]); > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
