Thank you for working on this dependency. I tried to build and run the libcofoja package, and it didn't work for me.
I did a git checkout of the debian-med repoistory, and set up the pristine-tar and upstream branches for gbp. I used pristine-tar checkout libcofoja- java_1.1-r150.orig.tar.xz to extract the source tar-ball. I built it with cowbuilder-dist sid. I was getting exceptions like the following.: ERROR [2014-03-10 14:37:36,472] [DefaultExceptionHandler.java:42] [AWT- EventQueue-1] Unhandled exception java.lang.UnsupportedClassVersionError: com/google/java/contract/util/Objects at org.broad.igv.data.Interval.contains(Interval.java:59) at org.broad.igv.track.LoadedDataInterval.contains(LoadedDataInterval.java:46) at org.broad.igv.track.DataTrack.render(DataTrack.java:83) at org.broad.igv.ui.panel.DataPanelPainter.draw(DataPanelPainter.java:260) at org.broad.igv.ui.panel.DataPanelPainter.paintFrame(DataPanelPainter.java:234) at org.broad.igv.ui.panel.DataPanelPainter.paint(DataPanelPainter.java:176) at org.broad.igv.ui.panel.DataPanel.paintComponent(DataPanel.java:138) One other thing odd I noticed about the package was the version number appeared to be included in the base name. /usr/share/java/cofoja-1.1-20140310-1.1.jar /usr/share/java/cofoja-1.1-20140310-bare-1.1.jar /usr/share/java/cofoja-1.1-20140310-bare.jar -> cofoja-1.1-20140310- bare-1.1.jar /usr/share/java/cofoja-1.1-20140310.jar -> cofoja-1.1-20140310-1.1.jar While a symlink more consistent with the other java packages would look more like: cofoja.jar -> cofoja-1.1-20140310-1.1-jar. I tried with both the 1.1 and bare jar files by loading a bigwig file and then trying to scroll around the file. Diane On Sunday, March 09, 2014 23:06:54 Andreas Tille wrote: > Hi Diane, > > would you mind testing > > git://anonscm.debian.org/debian-med/libcofoja-java.git > > whether it works as expected? > > Kind regards > > Andreas. > > On Fri, Mar 07, 2014 at 02:13:29PM -0800, Diane Trout wrote: > > Package: igv > > Version: 2.3.14+dfsg-1 > > Severity: normal > > > > --- Please enter the report below this line. --- > > > > Hi, > > > > In a few different cases I gotten a very similar a java stack trace. > > > > * I tried to download a new genome using the drop down box. > > * Hitting the X maximize window decoration > > * Several things that trigger tool tip popups. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
