Package: gromacs-openmpi
Version: 4.6.3-4
Severity: important
Dear Maintainer,
* What led up to the situation?
Trying to run grompp grompp_d
* What exactly did you do (or not do) that was effective (or
ineffective)?
It crashes
dmesg output:
[ 1699.966132] traps: grompp_d[9667] trap invalid opcode ip:7fb9311ac95d
sp:7ffff7700ee8 error:0 in libgmx_d.so.8[7fb9310d0000+4e9000]
[ 1728.255893] traps: grompp[9684] trap invalid opcode ip:7f6807c2c65d
sp:7fff560ed648 error:0 in libgmx.so.8[7f6807b51000+51b000]
* What was the outcome of this action?
crash.
* What outcome did you expect instead?
The problem looks like a miscompilation. I am working on i7 system. If I
compile gromacs from source it works. If I use dpkg-buildpackage it doesn't
work.
The problem is on libgmx/rando.c
-- System Information:
Debian Release: jessie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.10-3-amd64 (SMP w/24 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages gromacs-openmpi depends on:
ii libblas3 [libblas.so.3] 1.2.20110419-7
ii libc6 2.17-93
ii libfftw3-double3 3.3.3-5+b1
ii libfftw3-single3 3.3.3-5+b1
ii libgomp1 4.8.1-10
ii libhwloc5 1.7.2-1
ii liblapack3 [liblapack.so.3] 3.4.2+dfsg-4
ii libopenmpi1.6 1.6.5-5
ii openmpi-bin 1.6.5-5
Versions of packages gromacs-openmpi recommends:
ii gromacs 4.6.3-4
Versions of packages gromacs-openmpi suggests:
ii gromacs-data 4.6.3-4
-- no debconf information
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