Package: picard-tools
Version: 1.82-1
"picard-tools BuildBamIndex ..." fails with
Caused by: java.lang.ClassNotFoundException: net.sf.picard.util.BuildBamIndex
...
In /usr/bin/picard-tools, changing
BuildBamIndex) main=net.sf.picard.util.BuildBamIndex;;
to
BuildBamIndex) main=net.sf.picard.sam.BuildBamIndex;;
fixes the problem.
Probably all picard commands has to be checked.
Regards,
Ognyan Kulev
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