Apologies--I did not read the changelog of more recent git-annex
versions before reporting this bug, and I did not find any previous
bug reports concerning this in BTS.

I just noticed that this issue has already been fixed in version
3.20120825. Also, I forgot to mention that the repositories in
question were originally initialized in a Mac OS X machine using much
newer git-annex version (I think 4.something), which seem to use the
extension-preserving backend variants by default, unlike 3.20120629 in
wheezy.

However, given that git-annex repositories are often used in multiple
machines running different operating systems and git-annex versions,
it would be very nice if git-annex shipped in wheezy would be as
compatible as possible, and would fully support the composite
extensions.

This bug does not cause irretrievable data loss, but when this happens
with a repository that is the only copy, and the user don't know how
to fix it (is there a command to move the .git/annex/bad files back
into the original place automatically?), it can cause a lot of
headache, and the output of annex-fsck looks very scary if you don't
know what caused it, and that your files are still there, intact.

If it's too late to get this fixed in wheezy, please feel free to
close this bug (but I hope this will get fixed at least in 7.0.1).

Anyway, am I correct in assuming that the workaround would be
to use "git annex migrate" to move the troubled files to SHA256
backend without the E?

Thanks, Henrik


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