Package: wnpp Severity: wishlist Owner: "Michael R. Crusoe" <mcru...@asu.edu>
* Package name : sga Version : 0.9.35 Upstream Author : Jared Simpson <j...@sanger.ac.uk> * URL : https://github.com/jts/sga * License : GPLv3 Programming Lang: C++ Description : A de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads. The core algorithms are described in this paper: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/12/i367
