Package: condor Version: 7.8.1~dfsg.1-1~nd60+1 Severity: normal
Today I sent a large batch to condor (~50 jobs), then tried to kill the all with 'condor_rm andy'. This removed them from the condor_q list of running processes, but left them all actually running. I then had to kill them all manually using htop. the only thing I did was not normal was start the jobs from within an ipython session using "!" to escape the shell ( i don't think that should matter, but just in case.). I then tried called condor_rm from another bash shell... The program I was running was a pyMVPA surface based searchlight, which I believe uses a serial process for feature selection and only parallelizes after starting to compute the actual searchlight measures. And I believe that the programs were in the feature selection phase - serial processes, when I tried to kill them. nb. this was run on our "hydra" cluster thanks, Andy -- System Information: Debian Release: 6.0.5 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 2.6.32-5-amd64 (SMP w/8 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages condor depends on: ii adduser 3.112+nmu2 add and remove users and groups ii debconf [debconf-2 1.5.36.1 Debian configuration management sy ii libc6 2.11.3-3 Embedded GNU C Library: Shared lib ii libclassad3 7.8.1~dfsg.1-1~nd60+1 Condor classads expression languag ii libcomerr2 1.41.12-4stable1 common error description library ii libcurl3 7.21.0-2.1+squeeze2 Multi-protocol file transfer libra ii libdate-manip-perl 6.11-1 module for manipulating dates ii libexpat1 2.0.1-7 XML parsing C library - runtime li ii libgcc1 1:4.4.5-8 GCC support library ii libglobus-callout0 0.7-6 Globus Toolkit - Globus Callout Li ii libglobus-common0 11.5-2 Globus Toolkit - Common Library ii libglobus-ftp-cont 2.11-2 Globus Toolkit - GridFTP Control L ii libglobus-gass-tra 4.3-2 Globus Toolkit - Globus Gass Trans ii libglobus-gram-cli 10.4-1 Globus Toolkit - GRAM Client Libra ii libglobus-gram-pro 9.7-2 Globus Toolkit - GRAM Protocol Lib ii libglobus-gsi-call 2.7-1 Globus Toolkit - Globus GSI Callba ii libglobus-gsi-cert 6.6-1 Globus Toolkit - Globus GSI Cert U ii libglobus-gsi-cred 3.5-1 Globus Toolkit - Globus GSI Creden ii libglobus-gsi-open 0.14-6 Globus Toolkit - Globus OpenSSL Er ii libglobus-gsi-prox 4.5-1 Globus Toolkit - Globus GSI Proxy ii libglobus-gsi-prox 2.3-1 Globus Toolkit - Globus GSI Proxy ii libglobus-gsi-sysc 3.1-2 Globus Toolkit - Globus GSI System ii libglobus-gss-assi 5.9-1 Globus Toolkit - GSSAPI Assist lib ii libglobus-gssapi-e 2.5-7 Globus Toolkit - GSSAPI Error Libr ii libglobus-gssapi-g 7.5-2 Globus Toolkit - GSSAPI library ii libglobus-io3 6.3-8 Globus Toolkit - uniform I/O inter ii libglobus-openssl- 1.3-1 Globus Toolkit - Globus OpenSSL Mo ii libglobus-rsl2 7.2-2 Globus Toolkit - Resource Specific ii libglobus-xio0 2.8-3 Globus Toolkit - Globus XIO Framew ii libgssapi-krb5-2 1.8.3+dfsg-4squeeze5 MIT Kerberos runtime libraries - k ii libk5crypto3 1.8.3+dfsg-4squeeze5 MIT Kerberos runtime libraries - C ii libkrb5-3 1.8.3+dfsg-4squeeze5 MIT Kerberos runtime libraries ii libkrb5support0 1.8.3+dfsg-4squeeze5 MIT Kerberos runtime libraries - S ii libldap-2.4-2 2.4.23-7.2 OpenLDAP libraries ii libltdl7 2.2.6b-2 A system independent dlopen wrappe ii libpcre3 8.02-1.1 Perl 5 Compatible Regular Expressi ii libssl0.9.8 0.9.8o-4squeeze13 SSL shared libraries ii libstdc++6 4.4.5-8 The GNU Standard C++ Library v3 ii libuuid1 2.17.2-9 Universally Unique ID library ii libvirt0 0.8.3-5+squeeze2 library for interfacing with diffe ii libxml2 2.7.8.dfsg-2+squeeze4 GNOME XML library ii neurodebian-popula 0.28~nd60+1 Helper for NeuroDebian popularity ii perl 5.10.1-17squeeze3 Larry Wall's Practical Extraction ii python 2.6.6-3+squeeze7 interactive high-level object-orie ii zlib1g 1:1.2.3.4.dfsg-3 compression library - runtime Versions of packages condor recommends: ii dmtcp 1.2.5-1~nd60+1 Checkpoint/Restart functionality f Versions of packages condor suggests: ii coop-computing-tools 3.4.2-1~nd60+1 cooperative computing tools -- debconf information: condor/centralmanager: $(FULL_HOSTNAME) condor/allowwrite: *hydra.dartmouth.edu condor/reservedmemory: condor/admin: root@localhost * condor/wantdebconf: false condor/title: condor/startpolicy: false condor/uiddomain: hydra.dartmouth.edu condor/personal: true condor/localdir: /var condor/daemons: COLLECTOR:NEGOTIATOR, SCHEDD condor/filesystemdomain: hydra.dartmouth.edu condor/phonehome: false -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
