Package: qiime
Version: 1.4.0-1
Severity: normal
Hello everybody,
did I miss something, or is qiime not working out of the box ?
Whatever the tool I try to run, I have an error such as in the
following.
$ /usr/lib/qiime/bin/print_qiime_config.py
Traceback (most recent call last):
File "/usr/lib/qiime/bin/print_qiime_config.py", line 15, in <module>
from qiime.util import make_option
ImportError: No module named qiime.util
Cheers,
-- Charles
-- System Information:
Debian Release: wheezy/sid
APT prefers stable
APT policy: (910, 'stable'), (900, 'testing'), (800, 'unstable'), (500,
'stable-updates'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.39-bpo.2-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages qiime depends on:
ii libc6 2.13-21 Embedded GNU C Library: Shared lib
ii libffi5 3.0.9-3 Foreign Function Interface library
ii libgmp10 2:5.0.2+dfsg-1 Multiprecision arithmetic library
ii pynast [python-pynast] 1.1-3 alignment of short DNA sequences
ii python 2.6.6-14 interactive high-level object-orie
ii python-cogent 1.5.1-2 framework for genomic biology
Versions of packages qiime recommends:
ii ampliconnoise 1.25-1 Programs for the removal of noise
ii blast2 1:2.2.21.20090809-2 Basic Local Alignment Search Tool
ii cd-hit 4.5.7-1 suite of programs designed to quic
pn chimeraslayer <none> (no description available)
pn fasttree <none> (no description available)
ii infernal 1.0.2-1 inference of RNA secondary structu
ii muscle 1:3.8.31-1 Multiple alignment program of prot
ii python-matplotlib 1.1.0-1 Python based plotting system in a
ii python-numpy 1:1.5.1-3 Numerical Python adds a fast array
pn rdp-classifier <none> (no description available)
Versions of packages qiime suggests:
pn cytoscape <none> (no description available)
ii t-coffee 9.02.r1228-2 Multiple Sequence Alignment
-- no debconf information
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