Your message dated Sat, 03 Jan 2026 18:48:36 +0000
with message-id <[email protected]>
and subject line Bug#1110595: fixed in autodock-vina 1.2.7-2
has caused the Debian Bug report #1110595,
regarding autodock-vina ftbfs with boost1.88
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1110595: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1110595
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:autodock-vina
Version: 1.2.7-1
Severity: important
Tags: sid forky
User: [email protected]
Usertags: boost1.88

autodock-vina ftbfs with boost1.88:

[...]
g++ -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.7\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/autodock-vina-1.2.7-1build2 -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/parse_pdbqt.h:27,
                 from ../../../src/lib/vina.h:40,
                 from ../../../src/main/main.cpp:30:
/usr/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]
   28 | #    warning "Boost.Math requires C++14"
      |      ^~~~~~~
In file included from /usr/include/boost/math/tools/precision.hpp:15,
from /usr/include/boost/math/special_functions/sinc.hpp:19,
                 from /usr/include/boost/math/quaternion.hpp:21:
/usr/include/boost/math/tools/type_traits.hpp:208:12: error: ‘is_final’ has not been declared in ‘std’
  208 | using std::is_final;
      |            ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:259:12: error: ‘remove_cv_t’ has not been declared in ‘std’
  259 | using std::remove_cv_t;
      |            ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:261:12: error: ‘remove_const_t’ has not been declared in ‘std’
  261 | using std::remove_const_t;
      |            ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:263:12: error: ‘remove_volatile_t’ has not been declared in ‘std’
  263 | using std::remove_volatile_t;
      |            ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_cv_t’ has not been declared in ‘std’
  265 | using std::add_cv_t;
      |            ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:267:12: error: ‘add_const_t’ has not been declared in ‘std’
  267 | using std::add_const_t;
      |            ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:269:12: error: ‘add_volatile_t’ has not been declared in ‘std’
  269 | using std::add_volatile_t;
      |            ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:273:12: error: ‘remove_reference_t’ has not been declared in ‘std’
  273 | using std::remove_reference_t;
      |            ^~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:275:12: error: ‘add_lvalue_reference_t’ has not been declared in ‘std’
  275 | using std::add_lvalue_reference_t;
      |            ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:277:12: error: ‘add_rvalue_reference_t’ has not been declared in ‘std’
  277 | using std::add_rvalue_reference_t;
      |            ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:281:12: error: ‘remove_pointer_t’ has not been declared in ‘std’
  281 | using std::remove_pointer_t;
      |            ^~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:283:12: error: ‘add_pointer_t’ has not been declared in ‘std’
  283 | using std::add_pointer_t;
      |            ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:287:12: error: ‘make_signed_t’ has not been declared in ‘std’
  287 | using std::make_signed_t;
      |            ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:289:12: error: ‘make_unsigned_t’ has not been declared in ‘std’
  289 | using std::make_unsigned_t;
      |            ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:293:12: error: ‘remove_extent_t’ has not been declared in ‘std’
  293 | using std::remove_extent_t;
      |            ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:295:12: error: ‘remove_all_extents_t’ has not been declared in ‘std’
  295 | using std::remove_all_extents_t;
      |            ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:299:12: error: ‘decay_t’ has not been declared in ‘std’
  299 | using std::decay_t;
      |            ^~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:301:12: error: ‘enable_if_t’ has not been declared in ‘std’
  301 | using std::enable_if_t;
      |            ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:303:12: error: ‘conditional_t’ has not been declared in ‘std’
  303 | using std::conditional_t;
      |            ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:305:12: error: ‘common_type_t’ has not been declared in ‘std’
  305 | using std::common_type_t;
      |            ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:307:12: error: ‘underlying_type_t’ has not been declared in ‘std’
  307 | using std::underlying_type_t;
      |            ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:402:60: error: ‘is_final’ is not a member of ‘boost::math’; did you mean ‘is_final_v’? 402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
      |                                                            ^~~~~~~~
| is_final_v /usr/include/boost/math/tools/type_traits.hpp:402:70: error: expected primary-expression before ‘>’ token 402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value; | ^ /usr/include/boost/math/tools/type_traits.hpp:402:73: error: ‘::value’ has not been declared 402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value; | ^~~~~ /usr/include/boost/math/tools/type_traits.hpp:402:73: note: suggested alternatives: In file included from /usr/include/boost/program_options/value_semantic.hpp:421, from /usr/include/boost/program_options/options_description.hpp:13,
                 from /usr/include/boost/program_options.hpp:15,
                 from ../../../src/main/main.cpp:29:
/usr/include/boost/program_options/detail/value_semantic.hpp:197:5: note: ‘boost::program_options::value’
  197 |     value(T* v)
      |     ^~~~~
In file included from /usr/include/boost/thread/detail/thread.hpp:33,
                 from /usr/include/boost/thread/thread_only.hpp:22,
                 from /usr/include/boost/thread/thread.hpp:12,
                 from ../../../src/lib/vina.h:37:
/usr/include/boost/bind/bind.hpp:85:25: note:   ‘boost::_bi::value’
   85 | template<class T> class value
      |                         ^~~~~
In file included from /usr/include/boost/proto/matches.hpp:42,
                 from /usr/include/boost/phoenix/core/domain.hpp:12,
                 from /usr/include/boost/phoenix/core/actor.hpp:18,
                 from /usr/include/boost/log/expressions/attr.hpp:20,
                 from /usr/include/boost/log/expressions.hpp:20,
                 from ../../../src/lib/vina.h:34:
/usr/include/boost/proto/traits.hpp:1161:5: note:   ‘boost::proto::value’
 1161 |     value(Expr const &e)
      |     ^~~~~
In file included from /usr/include/boost/phoenix/core/value.hpp:15,
from /usr/include/boost/phoenix/scope/local_variable.hpp:15,
                 from /usr/include/boost/phoenix/operator.hpp:21,
                 from /usr/include/boost/log/expressions.hpp:32:
/usr/include/boost/phoenix/core/is_value.hpp:30:16: note: ‘boost::phoenix::expression::value’
   30 |         struct value;
      |                ^~~~~
/usr/include/boost/proto/traits.hpp:294:16: note: ‘boost::proto::result_of::value’
  294 |         struct value
      |                ^~~~~
/usr/include/boost/proto/traits.hpp:824:16: note: ‘boost::proto::functional::value’
  824 |         struct value
      |                ^~~~~
make[2]: *** [../../makefile_common:47: main.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build/linux/release'
make[1]: *** [debian/rules:16: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:13: binary] Error 2

--- End Message ---
--- Begin Message ---
Source: autodock-vina
Source-Version: 1.2.7-2
Done: Étienne Mollier <[email protected]>

We believe that the bug you reported is fixed in the latest version of
autodock-vina, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated autodock-vina 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 03 Jan 2026 18:58:21 +0100
Source: autodock-vina
Architecture: source
Version: 1.2.7-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1110595
Changes:
 autodock-vina (1.2.7-2) unstable; urgency=medium
 .
   * unenforce-standard-c++.patch: new: do not enforce std=c++11.
   * fortify.patch: update: ensure LDFLAGS are not erased.
   * d/rules: fix compilation flags setting.
   * d/rules: pass -std=c++14 to compiler flags. (Closes: #1110595)
   * d/control: drop redundant Priority: optional.
   * d/control: drop redundant Rules-Requires-Root: no.
   * d/control: declare compliance to standards version 4.7.3.
   * d/watch: convert to v5 Github template.
   * d/{clean,rules}: move files cleanup to d/clean.
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autodock-vina_1.2.7-2.debian.tar.xz
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autodock-vina_1.2.7-2.dsc
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--- End Message ---

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