Your message dated Sun, 11 May 2025 22:06:41 +0000
with message-id <e1ueeoj-001zay...@fasolo.debian.org>
and subject line Bug#1104387: fixed in mdanalysis 2.9.0-8
has caused the Debian Bug report #1104387,
regarding mdanalysis: FTBFS randomly: E: Build killed with signal TERM after
150 minutes of inactivity
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1104387: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1104387
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mdanalysis
Version: 2.9.0-7
Severity: important
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20250428 ftbfs-trixie ftbfs-randomly
Hi,
Your package fails to build randomly on amd64: In the exact same
environment, sometimes it builds fine, and sometimes it fails.
Relevant part (hopefully):
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index
> 0 to 8 -np_slice1-None-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index
> 0 to 8 -np_slice1-box1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index
> 9-np_slice2-None-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index
> 9-np_slice2-box1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index
> 0 to 8 -np_slice0-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index
> 9-np_slice1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[serial]
> PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[None]
> E: Build killed with signal TERM after 150 minutes of inactivity
The full build log is available from:
http://qa-logs.debian.net/2025/04/28/mdanalysis_2.9.0-7_unstable.log
You can find other build logs (including successful ones) in:
http://qa-logs.debian.net/2025/04/28/
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250428;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250428&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: mdanalysis
Source-Version: 2.9.0-8
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
mdanalysis, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1104...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated mdanalysis package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 11 May 2025 23:44:46 +0200
Source: mdanalysis
Architecture: source
Version: 2.9.0-8
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1104387
Changes:
mdanalysis (2.9.0-8) unstable; urgency=medium
.
* skip test_distances, since NSGrid is flaky and causes distance
tests to often (randomly) fail, see upstream Issue #4906.
Closes: #1104387
Checksums-Sha1:
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Files:
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52f9c33eb8b929bc69ac674b238a0aff 13272 python optional
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--- End Message ---
