Your message dated Sun, 04 May 2025 22:19:34 +0000
with message-id <e1ubhgm-000eja...@fasolo.debian.org>
and subject line Bug#1097455: fixed in neuron 8.2.6-1
has caused the Debian Bug report #1097455,
regarding neuron: ftbfs with GCC-15
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1097455: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097455
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:neuron
Version: 8.2.2-7
Severity: important
Tags: sid forky
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-15
[This bug is NOT targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.
The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/neuron_8.2.2-7_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html
[...]
/build/reproducible-path/neuron-8.2.2/src/mesch/arnoldi.c: In function ‘gmres’:
/build/reproducible-path/neuron-8.2.2/src/mesch/arnoldi.c:121:10: warning:
old-style function definition [-Wold-style-definition]
121 | VEC *gmres(A,A_param,m,Q,R,b,tol,x)
| ^~~~~
In file included from
/build/reproducible-path/neuron-8.2.2/src/mesch/matrix.h:47,
from
/build/reproducible-path/neuron-8.2.2/src/mesch/arnoldi.c:33:
/build/reproducible-path/neuron-8.2.2/src/mesch/arnoldi.c:162:25: error: too
many arguments to function ‘A’; expected 0, have 3
162 | tracecatch(u = (*A)(A_param,v,u),"gmres");
| ~^~~ ~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/err.h:171:25: note: in
definition of macro ‘tracecatch’
171 | { ok_part; \
| ^~~~~~~
make[3]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2598:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/mesch/arnoldi.c.o] Error 1
make[3]: *** Waiting for unfinished jobs....
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_get’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:53:7: warning:
old-style function definition [-Wold-style-definition]
53 | BAND *bd_get(lb,ub,n)
| ^~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_free’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:74:5: warning:
old-style function definition [-Wold-style-definition]
74 | int bd_free(A)
| ^~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_resize’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:95:7: warning:
old-style function definition [-Wold-style-definition]
95 | BAND *bd_resize(A,new_lb,new_ub,new_n)
| ^~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_copy’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:156:7: warning:
old-style function definition [-Wold-style-definition]
156 | BAND *bd_copy(A,B)
| ^~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘band2mat’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:187:6: warning:
old-style function definition [-Wold-style-definition]
187 | MAT *band2mat(bA,A)
| ^~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘mat2band’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:218:7: warning:
old-style function definition [-Wold-style-definition]
218 | BAND *mat2band(A,lb,ub,bA)
| ^~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_transp’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:253:7: warning:
old-style function definition [-Wold-style-definition]
253 | BAND *bd_transp(in,out)
| ^~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bdLUfactor’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:366:10: warning:
old-style function definition [-Wold-style-definition]
366 | BAND *bdLUfactor(bA,pivot)
| ^~~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bdLUsolve’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:449:10: warning:
old-style function definition [-Wold-style-definition]
449 | VEC *bdLUsolve(bA,pivot,b,x)
| ^~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bdLDLfactor’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:507:7: warning:
old-style function definition [-Wold-style-definition]
507 | BAND *bdLDLfactor(A)
| ^~~~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bdLDLsolve’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:554:9: warning:
old-style function definition [-Wold-style-definition]
554 | VEC *bdLDLsolve(A,b,x)
| ^~~~~~~~~~
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c: In function
‘bd_mv_mlt’:
/build/reproducible-path/neuron-8.2.2/src/mesch/bdfactor.c:613:6: warning:
old-style function definition [-Wold-style-definition]
613 | VEC *bd_mv_mlt(A, x, out)
| ^~~~~~~~~
make[3]: Leaving directory
'/build/reproducible-path/neuron-8.2.2/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:534: src/nrniv/CMakeFiles/nrniv_lib.dir/all]
Error 2
make[2]: Leaving directory
'/build/reproducible-path/neuron-8.2.2/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:139: all] Error 2
make[1]: Leaving directory
'/build/reproducible-path/neuron-8.2.2/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j8 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:22: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: neuron
Source-Version: 8.2.6-1
Done: Matthias Klumpp <m...@debian.org>
We believe that the bug you reported is fixed in the latest version of
neuron, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1097...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Matthias Klumpp <m...@debian.org> (supplier of updated neuron package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 04 May 2025 23:46:45 +0200
Source: neuron
Architecture: source
Version: 8.2.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Matthias Klumpp <m...@debian.org>
Closes: 1097455
Changes:
neuron (8.2.6-1) unstable; urgency=medium
.
* New upstream version: 8.2.6
* Update d/watch file
* Refresh patches, drop ones that were merged upstream
* Add python3.13-support.patch from upstream for Python 3.13 support
* Update build dependencies
* Add fix-missing-std-namespace.patch, gcc-15-fix.patch:
- Resolves FTBFS with newer compilers (Closes: #1097455)
* Add fix-gitless-build.patch: Make package build outside of a Git repo
* Add missing link for nrnpyenv.sh to PATH
* Add missing numpy ABI dependency
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Files:
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837446dffd35821da944ac0e39d948a3 12244673 science optional
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