Bug#1104158: marked as done (autopkgtest fails on a 32-bit architecture)

Mon, 28 Apr 2025 14:39:58 -0700 

Your message dated Mon, 28 Apr 2025 21:35:06 +0000
with message-id <e1u9w82-004rwz...@fasolo.debian.org>
and subject line Bug#1104158: fixed in r-cran-hdf5r 1.3.12+dfsg-2
has caused the Debian Bug report #1104158,
regarding autopkgtest fails on a 32-bit architecture
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1104158: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1104158
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message --- 
Source: r-cran-testthat, r-cran-hdf5r
Control: found -1 r-cran-testthat/3.2.3-1
Control: found -1 r-cran-hdf5r/1.3.12+dfsg-1
Severity: serious
Tags: sid trixie
User: debian...@lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),
With a recent upload of r-cran-testthat the autopkgtest of r-cran-hdf5r fails in testing when that autopkgtest is run with the binary packages of r-cran-testthat from unstable. It passes when run with only packages from testing. In tabular form: 

                       pass            fail
r-cran-testthat        from testing    3.2.3-1
r-cran-hdf5r           from testing    1.3.12+dfsg-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of r-cran-testthat to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? 

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=r-cran-testthat

https://ci.debian.net/data/autopkgtest/testing/armel/r/r-cran-hdf5r/60239896/log.gz
59s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 
 59s BEGIN TEST testthat.R
 59s  59s R version 4.4.3 (2025-02-28) -- "Trophy Case"
 59s Copyright (C) 2025 The R Foundation for Statistical Computing
 59s Platform: arm-unknown-linux-gnueabi (32-bit)
 59s  59s R is free software and comes with ABSOLUTELY NO WARRANTY.
 59s You are welcome to redistribute it under certain conditions.
 59s Type 'license()' or 'licence()' for distribution details.
 59s  59s R is a collaborative project with many contributors.
 59s Type 'contributors()' for more information and
 59s 'citation()' on how to cite R or R packages in publications.
 59s  59s Type 'demo()' for some demos, 'help()' for on-line help, or
 59s 'help.start()' for an HTML browser interface to help.
 59s Type 'q()' to quit R.
 59s  59s > library(testthat)
 59s > library(hdf5r)
 60s >  60s > test_check("hdf5r")
 73s [ FAIL 49 | WARN 0 | SKIP 3 | PASS 449 ]
73s 73s ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ 
 73s • empty test (3): 'test-h5t.R:147:1', 'test-h5t.R:174:1',
 73s   'test-zzz-H5File.R:156:1'
73s 74s ══ Failed tests ════════════════════════════════════════════════════════════════ 75s ── Error ('test-64bit_support.R:43:5'): Dataset with more than 2^31 rows ─────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_equal(...) at test-64bit_support.R:43:5
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. ├─large_ds[(2^32 - 20):(2^32 + 20)]
 75s  5. └─hdf5r:::`[.H5D`(large_ds, (2^32 - 20):(2^32 + 20))
 75s  6.   └─x$read(...)
 75s  7.     └─self$read_low_level(...)
75s ── Error ('test-convert.R:33:5'): Convert H5T_FLOAT works ────────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(Robj, dtype_double) at test-convert.R:33:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:77:5'): Convert H5T_INTEGER works ──────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(robj_double, dtype_uint64) at test-convert.R:77:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:118:5'): Convert H5T_STRING works ──────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(string.utf8, dtype_string_unknown) at test-convert.R:118:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:169:5'): Convert R_Complex works ───────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(r_cmplx, dtype_complex) at test-convert.R:169:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:183:5'): Convert H5T_COMPOUND works ────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(test_frame, dtype_cpd) at test-convert.R:183:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:194:5'): Convert H5T_ARRAY works ───────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(test_data, dtype_array, nelem = 20) at test-convert.R:194:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:204:5'): Convert H5T_VLEN works ────────────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(test_data, dtype_vlen) at test-convert.R:204:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-convert.R:327:5'): Logical with and without NA ───────────────── 
 75s Error in `H5ToR_Pre(dtype, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r:::convertRoundTrip(logical_noNA, dtype_logical_noNA) at test-convert.R:327:5 
 75s  2.   └─hdf5r:::H5ToR_Pre(dtype, nelem)
75s ── Error ('test-h5a.R:42:5'): Basic dataset function ─────────────────────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r (local) read_write_roundtrip(attr_int64, 1:20) at test-h5a.R:42:5 
 75s  2.   └─h5attr$read() at test-h5a.R:22:5
 75s  3.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-h5a.R:151:5'): Creating attributes of different types ────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r (local) read_write_roundtrip(attr_int32, 1:20) at test-h5a.R:151:5 
 75s  2.   └─h5attr$read() at test-h5a.R:22:5
 75s  3.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-h5a.R:226:5'): Creating attributes of different types of length 0 ── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r (local) read_write_roundtrip(attr_int32, integer(0)) at test-h5a.R:226:5 
 75s  2.   └─h5attr$read() at test-h5a.R:22:5
 75s  3.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-h5d.R:49:5'): Basic dataset function ─────────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r (local) read_write_roundtrip(ds_int64_chunked, 1:20) at test-h5d.R:49:5 
 75s  2.   └─ds$read() at test-h5d.R:24:5
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-h5d.R:136:5'): Creating datasets of different types ──────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. └─hdf5r (local) read_write_roundtrip(ds_int32, 1:20) at test-h5d.R:136:5 
 75s  2.   └─ds$read() at test-h5d.R:24:5
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-h5p.R:80:5'): H5P_DATASET_CREATE works ───────────────────────── 
 75s Error in `H5ToR_Pre(dtype, 1)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_equal(h5p_obj$get_fill_value(dtype_int), 1) at test-h5p.R:80:5 
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. └─h5p_obj$get_fill_value(dtype_int)
 75s  5.   └─hdf5r:::H5ToR_Pre(dtype, 1)
75s ── Error ('test-high_level_UI.R:61:5'): Names and [[ ─────────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_equal(file.h5[["test_dataset2"]]$read(), robj) at test-high_level_UI.R:61:5 
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. └─file.h5[["test_dataset2"]]$read()
 75s  5.   └─self$read_low_level(...)
75s ── Error ('test-high_level_UI.R:269:13'): subset_h5.H5D ──────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_equal(test[ind1, ind2], robj[ind1, ind2]) at test-high_level_UI.R:269:13 
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. ├─test[ind1, ind2]
 75s  5. └─hdf5r:::`[.H5D`(test, ind1, ind2)
 75s  6.   └─x$read(...)
 75s  7.     └─self$read_low_level(...)
75s ── Error ('test-high_level_UI.R:343:5'): attributes ──────────────────────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::h5attributes(file.h5) at test-high_level_UI.R:343:5
 75s  2.   └─attr_obj$read()
 75s  3.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-high_level_UI.R:368:5'): Subsetting dimensions, drop and write ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_equal(ex_arr_ds[2, , ], ex_array[2, , ]) at test-high_level_UI.R:368:5 
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. ├─ex_arr_ds[2, , ]
 75s  5. └─hdf5r:::`[.H5D`(ex_arr_ds, 2, , )
 75s  6.   └─x$read(...)
 75s  7.     └─self$read_low_level(...)
75s ── Error ('test-reference.R:246:5'): Create and dereference references; save in a dataset ── 75s Error in `obj_ds$read_low_level(file_space = obj_space, mem_type = obj_ds_dtype, 75s set_dim = TRUE, dim_to_set = dim_to_set)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─ds_ref_1$dereference(get_value = TRUE) at test-reference.R:246:5
 75s  2.   └─obj_ds$read_low_level(...)
75s ── Error ('test-zzz-Attribute.R:57:3'): Attribute-Errors ─────────────────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_that(...) at test-zzz-Attribute.R:57:3
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::h5attr(file, "test")
 75s  7.   └─attr_obj$read()
 75s  8.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-zzz-Attribute.R:106:5'): Attribute-H5Type-File ───────────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(h5attr(file, aname), is_identical_to(testall[[i]])) at test-zzz-Attribute.R:106:5 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::h5attr(file, aname)
 75s  7.   └─attr_obj$read()
 75s  8.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-zzz-Attribute.R:183:3'): Attribute-Bug-Scalar-Issue09 ────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_that(...) at test-zzz-Attribute.R:183:3
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─base::substr(h5attr(file[["floats"]], "scalar"), 1, 5)
 75s  7. └─hdf5r::h5attr(file[["floats"]], "scalar")
 75s  8.   └─attr_obj$read()
 75s  9.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
75s ── Error ('test-zzz-DataSet-extend.R:43:3'): DataSet-extend ──────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_equal(readDataSet(dset2), testmat) at test-zzz-DataSet-extend.R:43:3 
 75s  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 75s  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  4. └─hdf5r::readDataSet(dset2)
 75s  5.   └─object$read()
 75s  6.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-extend.R:75:3'): DataSet-extend-matrix-rbind ─────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_that(...) at test-zzz-DataSet-extend.R:75:3
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset1)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-extend.R:110:3'): DataSet-extend-matrix-cbind ────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_that(...) at test-zzz-DataSet-extend.R:110:3
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset1)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-extend.R:137:3'): DataSet-extend-vector-c ────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n_extend)) at test-zzz-DataSet-extend.R:137:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset1)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO-NA.R:40:3'): DataSet-Vector-NA ────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset11) at test-zzz-DataSet-IO-NA.R:40:3
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO.R:36:3'): DataSet-Vector ──────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset11) at test-zzz-DataSet-IO.R:36:3
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO.R:105:3'): DataSet-Vector-boundaries ──────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset1) at test-zzz-DataSet-IO.R:105:3
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO.R:158:3'): datatypes-Matrix ───────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset11) at test-zzz-DataSet-IO.R:158:3
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO.R:223:3'): datatypes-Array ────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset11) at test-zzz-DataSet-IO.R:223:3
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-IO.R:271:3'): datatypes-Array-BugWithASCII ───────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(file[["test/ascii"]][], is_identical_to(varlength)) at test-zzz-DataSet-IO.R:271:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─file[["test/ascii"]][]
 75s  7. └─hdf5r:::`[.H5D`(file[["test/ascii"]], )
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-scalar.R:9:7'): datatypes-Array-BugWithScalar ────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = self_space_id, 75s dataset_xfer_pl = dataset_xfer_pl)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─dset[] at test-zzz-DataSet-scalar.R:9:7
 75s  2. └─hdf5r:::`[.H5D`(dset, ) at test-zzz-DataSet-scalar.R:9:7
 75s  3.   └─x$read(...)
 75s  4.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:78:3'): DataSet-Select-Subset-vector-read ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─dset1[1:dset1$dims] at test-zzz-DataSet-Select-Subset.R:78:3
75s 2. └─hdf5r:::`[.H5D`(dset1, 1:dset1$dims) at test-zzz-DataSet-Select-Subset.R:78:3 
 75s  3.   └─x$read(...)
 75s  4.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:115:7'): DataSet-Select-Subset-read-string ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(testvec[1:3], is_identical_to(LETTERS[1:3])) at test-zzz-DataSet-Select-Subset.R:115:7 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─testvec[1:3]
 75s  7. └─hdf5r:::`[.H5D`(testvec, 1:3)
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:149:7'): DataSet-Select-Subset-read-string-fixed ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(testvec[1:3], is_identical_to(LETTERS[1:3])) at test-zzz-DataSet-Select-Subset.R:149:7 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─testvec[1:3]
 75s  7. └─hdf5r:::`[.H5D`(testvec, 1:3)
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:196:3'): DataSet-Select-Subset-vector-write ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─dset1[] at test-zzz-DataSet-Select-Subset.R:196:3
75s 2. └─hdf5r:::`[.H5D`(dset1, ) at test-zzz-DataSet-Select-Subset.R:196:3 
 75s  3.   └─x$read(...)
 75s  4.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:249:3'): DataSet-Select-Subset-matrix-read ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n)) at test-zzz-DataSet-Select-Subset.R:249:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset1)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:296:3'): DataSet-Select-Subset-matrix-write ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(dset2[2, 2], is_identical_to(-2L)) at test-zzz-DataSet-Select-Subset.R:296:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─dset2[2, 2]
 75s  7. └─hdf5r:::`[.H5D`(dset2, 2, 2)
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:399:3'): DataSet-Select-Subset-array-read ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(readDataSet(dset1), is_identical_to(testmat_n)) at test-zzz-DataSet-Select-Subset.R:399:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset1)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet-Select-Subset.R:458:3'): DataSet-Select-Subset-array-write ── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(dset2[2, 2, 2], is_identical_to(-2L)) at test-zzz-DataSet-Select-Subset.R:458:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─dset2[2, 2, 2]
 75s  7. └─hdf5r:::`[.H5D`(dset2, 2, 2, 2)
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet.R:182:3'): DataSet-list-dataset-link ─────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(file[["hardlink/test2"]][], is_identical_to(1:3)) at test-zzz-DataSet.R:182:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─file[["hardlink/test2"]][]
 75s  7. └─hdf5r:::`[.H5D`(file[["hardlink/test2"]], )
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-DataSet.R:203:3'): DataSet-Bug-F32-Issue10 ───────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. ├─testthat::expect_that(...) at test-zzz-DataSet.R:203:3
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─file[["floats"]][]
 75s  7. └─hdf5r:::`[.H5D`(file[["floats"]], )
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-H5File-Subset.R:58:3'): H5File-Subset-DataSet ────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(readDataSet(dset), is_identical_to(1:10)) at test-zzz-H5File-Subset.R:58:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. └─hdf5r::readDataSet(dset)
 75s  7.   └─object$read()
 75s  8.     └─self$read_low_level(...)
75s ── Error ('test-zzz-H5Group.R:216:3'): CommonFG-unlink ───────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(file[["testgroup/testset"]][], is_identical_to(5:6)) at test-zzz-H5Group.R:216:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─file[["testgroup/testset"]][]
 75s  7. └─hdf5r:::`[.H5D`(file[["testgroup/testset"]], )
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-io.R:20:2'): datatypes-IO ────────────────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::readDataSet(dset) at test-zzz-io.R:20:9
 75s  2.   └─object$read()
 75s  3.     └─self$read_low_level(...)
75s ── Error ('test-zzz-vlen.R:69:3'): DataSet-VLEN-Vector ───────────────────────── 75s Error in `self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, 75s dataset_xfer_pl = dataset_xfer_pl, set_dim = TRUE, dim_to_set = dim_to_set, 75s drop = drop)`: HDF5-API Errors: 75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
75s 1. ├─testthat::expect_that(testlist_n_in[], is_identical_to(testlist_n)) at test-zzz-vlen.R:69:3 
 75s  2. │ └─testthat (local) condition(object)
75s 3. │ └─testthat::expect_identical(x, expected, expected.label = label) 75s 4. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 
 75s  5. │       └─rlang::eval_bare(expr, quo_get_env(quo))
 75s  6. ├─testlist_n_in[]
 75s  7. └─hdf5r:::`[.H5D`(testlist_n_in, )
 75s  8.   └─x$read(...)
 75s  9.     └─self$read_low_level(...)
75s ── Error ('test-zzz-vlen.R:117:3'): DataSet-VLEN-Vector-Attribute ────────────── 
 75s Error in `H5ToR_Pre(mem_type, nelem)`: HDF5-API Errors:
75s error #000: ../../../src/H5T.c in H5Tget_class(): line 2221: not a datatype 
 75s         class: HDF5
 75s         major: Invalid arguments to routine
 75s         minor: Inappropriate type
 75s  75s Backtrace:
 75s     ▆
 75s  1. └─hdf5r::h5attr(testgroup, "testlist_n") at test-zzz-vlen.R:117:3
 75s  2.   └─attr_obj$read()
 75s  3.     └─hdf5r:::H5ToR_Pre(mem_type, nelem)
 75s  75s [ FAIL 49 | WARN 0 | SKIP 3 | PASS 449 ]
 75s Error: Test failures
 75s Execution halted
 75s autopkgtest [12:08:36]: test run-unit-test

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--- End Message ---
--- Begin Message --- 
Source: r-cran-hdf5r
Source-Version: 1.3.12+dfsg-2
Done: Rebecca N. Palmer <rebecca_pal...@zoho.com>

We believe that the bug you reported is fixed in the latest version of
r-cran-hdf5r, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1104...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Rebecca N. Palmer <rebecca_pal...@zoho.com> (supplier of updated r-cran-hdf5r 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA512

Format: 1.8
Date: Mon, 28 Apr 2025 19:17:21 +0100
Source: r-cran-hdf5r
Architecture: source
Version: 1.3.12+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Rebecca N. Palmer <rebecca_pal...@zoho.com>
Closes: 1104158
Changes:
 r-cran-hdf5r (1.3.12+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * Warn that this may be buggy on 32-bit systems
     and skip autopkgtest on armel. (Closes: #1104158)
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Files:
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r-cran-hdf5r_1.3.12+dfsg-2.debian.tar.xz
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r-cran-hdf5r_1.3.12+dfsg-2_source.buildinfo

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