Your message dated Tue, 22 Apr 2025 17:33:29 +0000
with message-id <e1u7huv-008pna...@fasolo.debian.org>
and subject line Bug#1103727: Removed package(s) from unstable
has caused the Debian Bug report #1103727,
regarding RM: r-cran-genabel, r-cran-genabel.data -- RoM; RC-buggy, abandonned
upstream
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1103727: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103727
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: ftp.debian.org
Priority: normal
Dear FTP team,
r-cran-genabel has a RC bug, which we would like to solve by removal from
Debian.
The upstream GenABEL R package was archived in 2018 and there is no support for
it.
Its companion data package was archived as well, therefore please also remove
r-cran-genabel.data.
Thanks!
Charles
Le Wed, Apr 16, 2025 at 04:29:17PM +0900, Charles Plessy a écrit :
> Thanks a lot but maybe we just should remove r-cran-genabel altogether?
>
> https://cran.r-project.org/web/packages/GenABEL/index.html
>
> Have a nice day,
>
> Charles
>
> Le Wed, Apr 16, 2025 at 03:12:45PM +0800, liwenjun a écrit :
> > Package: src:r-cran-genabel
> > Version: 1.8-0-7
> > Severity: serious
> > Tags: ftbfs trixie sid
> >
> > Dear maintainer:
> >
> > Hi, I'm summitting a patch for fixing this FTBFS problem while building
> > with R 4.5.0 on Debian sid,trixie.
> >
> > My patch Fix-FTBFS-error.patch replace Calloc() and Free() with R_Calloc()
> > and R_Free(), accoding to the R-project's NEWS(R: R News
> > <https://cran.r-project.org/doc/manuals/r-release/NEWS.html>)
> >
> > And by the way, Please help me for uploading this patch to upstream if you
> > think it's necessary.
> >
> > Best regards,
> >
> > liwenjun
> >
>
> > Description: Fix FTBFS error on R 4.5.0
> > This patch replace Calloc() and Free() to R_Calloc() R_Free()
> > for fixing FTBFS errors on DEBIAN sid, trixy.
> > Accoding to the R-project's
> > NEWS.(https://cran.r-project.org/doc/manuals/r-release/NEWS.html).
> > R 4.5.0 has been changed those funtions.
> > Author: liwenjun <liwen...@kylinos.cn>
> > Origin: other, None
> > Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103201
> > Last-Update: 2025-04-16
> >
> > --- r-cran-genabel-1.8-0.orig/src/fexact.c
> > +++ r-cran-genabel-1.8-0/src/fexact.c
> > @@ -178,7 +178,7 @@ fexact(int *nrow, int *ncol, int *table,
> > //Maksim Struchalin, 14-June-2010:
> > // In case of use R_alloc memory is freed only when routine .C finishes.
> > We have got memorry leak in case when we call fexat in a loop "inside" ".C"
> > .
> > // equiv = (double *) R_alloc(iwkmax / 2, sizeof(double));
> > - equiv = (double *) Calloc(iwkmax / 2, double); // call
> > Free(equiv) at the end.
> > + equiv = (double *) R_Calloc(iwkmax / 2, double); // call
> > R_Free(equiv) at the end.
> > //_________________________________
> >
> >
> > @@ -302,7 +302,7 @@ fexact(int *nrow, int *ncol, int *table,
> > dwrk + irwk);
> >
> >
> > - Free(equiv);
> > + R_Free(equiv);
> >
> > return;
> > }
>
> > _______________________________________________
> > R-pkg-team mailing list
> > r-pkg-t...@alioth-lists.debian.net
> > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team
>
>
> --
> Charles Plessy Nagahama, Yomitan, Okinawa, Japan
> Debian Med packaging team http://www.debian.org/devel/debian-med
> Tooting from home https://framapiaf.org/@charles_plessy
> - You do not have my permission to use this email to train an AI -
>
> _______________________________________________
> R-pkg-team mailing list
> r-pkg-t...@alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team http://www.debian.org/devel/debian-med
Tooting from home https://framapiaf.org/@charles_plessy
- You do not have my permission to use this email to train an AI -
--- End Message ---
--- Begin Message ---
We believe that the bug you reported is now fixed; the following
package(s) have been removed from unstable:
r-cran-genabel | 1.8-0-7 | source, amd64, armel, armhf, i386, mips64el,
ppc64el, s390x
r-cran-genabel | 1.8-0-7+b1 | arm64, riscv64
r-cran-genabel.data | 1.0.0-4 | source, all
------------------- Reason -------------------
RoM; RC-buggy, abandonned upstream
----------------------------------------------
Note that the package(s) have simply been removed from the tag
database and may (or may not) still be in the pool; this is not a bug.
The package(s) will be physically removed automatically when no suite
references them (and in the case of source, when no binary references
it). Please also remember that the changes have been done on the
master archive and will not propagate to any mirrors until the next
dinstall run at the earliest.
Packages are usually not removed from testing by hand. Testing tracks
unstable and will automatically remove packages which were removed
from unstable when removing them from testing causes no dependency
problems. The release team can force a removal from testing if it is
really needed, please contact them if this should be the case.
We try to close bugs which have been reported against this package
automatically. But please check all old bugs, if they were closed
correctly or should have been re-assigned to another package.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1103...@bugs.debian.org.
The full log for this bug can be viewed at https://bugs.debian.org/1103727
This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.
Debian distribution maintenance software
pp.
Thorsten Alteholz (the ftpmaster behind the curtain)
--- End Message ---
