Your message dated Thu, 17 Apr 2025 09:49:31 +0000
with message-id <e1u5lsb-000kbr...@fasolo.debian.org>
and subject line Bug#1103367: fixed in mdanalysis 2.9.0-2
has caused the Debian Bug report #1103367,
regarding FTBFS: autobuilder hangs
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1103367: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103367
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mdanalysis
Version: 2.9.0-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20250416 ftbfs-trixie
Hi,
During a rebuild of all packages in testing (trixie), your package failed
to build on armhf.
Relevant part (hopefully):
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box2]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-None]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box1]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box2]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-None]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box1]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box2]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-None]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box1]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box2]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-None]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box1]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box2]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-serial]
> PASSED [ 43%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-openmp]
>
> E: Build killed with signal TERM after 150 minutes of inactivity
The full build log is available from:
http://qa-logs.debian.net/2025/04/16/mdanalysis_2.9.0-1_testing-armhf.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250416;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250416&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: mdanalysis
Source-Version: 2.9.0-2
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
mdanalysis, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1103...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated mdanalysis package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 17 Apr 2025 00:54:54 +0200
Source: mdanalysis
Architecture: source
Version: 2.9.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1103158 1103367
Changes:
mdanalysis (2.9.0-2) unstable; urgency=medium
.
* drop PMG_TEST_FILES_DIR env var in debian/tests
* debian patch improve_test_timeout_PR4584.diff applies upstream
PR#4584 (diff not patch) to help improve test reliability
* gsd causes timeouts. Explicitly disable gsd tests.
debian patch skip_gsd_tests.patch sets HAS_GSD=False in tests.
https://github.com/MDAnalysis/mdanalysis/issues/4209
Closes: #1103158, #1103367
Checksums-Sha1:
347b2321650aacdcf1079f13578ccc0676289073 2941 mdanalysis_2.9.0-2.dsc
b41844f64c95d83725757da4ac13e39e520fb1f5 12344 mdanalysis_2.9.0-2.debian.tar.xz
Checksums-Sha256:
0040188169b420e21f6b446d5b2a49bc4d24afda05fb88ff34530f2208b3e513 2941
mdanalysis_2.9.0-2.dsc
5a79d77600e26a800c4bd57af2c00e3a9aafda570f3236090941b147b83f95b5 12344
mdanalysis_2.9.0-2.debian.tar.xz
Files:
c2f639ebbc24e3a51daf4d9f0fae8229 2941 python optional mdanalysis_2.9.0-2.dsc
013393822a85c705f9744af16ce4718f 12344 python optional
mdanalysis_2.9.0-2.debian.tar.xz
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--- End Message ---
