Your message dated Tue, 21 Nov 2023 07:34:24 +0000
with message-id <e1r5lh6-00dj7q...@fasolo.debian.org>
and subject line Bug#1056323: fixed in python-biom-format 2.1.15.2-1
has caused the Debian Bug report #1056323,
regarding python-biom-format: FTBFS with Python 3.12 (test failures)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1056323: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056323
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biom-format
Version: 2.1.12-3
Severity: important
Tags: ftbfs sid trixie
User: debian-pyt...@lists.debian.org
Usertags: python3.12
Hi Maintainer
python-biom-format FTBFS with Python 3.12 as a supported version.
I've copied below what I hope is the relevant part of the log.
Regards
Graham
=================================== FAILURES ===================================
_______________________ TestSummarizeTable.test_default ________________________
self = <biom.tests.test_cli.test_summarize_table.TestSummarizeTable
testMethod=test_default>
def test_default(self):
""" TableSummarizer functions as expected
"""
> result = _summarize_table(self.biom1)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_summarize_table.py:30:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
table = 14 x 9 <class 'biom.table.Table'> with 30 nonzero entries (23% dense)
qualitative = False, observations = False
def _summarize_table(table, qualitative=False, observations=False):
lines = []
locale.setlocale(locale.LC_ALL, '')
if observations:
table = table.transpose()
min_counts, max_counts, median_counts, mean_counts, counts_per_samp =\
compute_counts_per_sample_stats(table, qualitative)
num_observations = len(table.ids(axis='observation'))
counts_per_sample_values = list(counts_per_samp.values())
if table.metadata() is None:
sample_md_keys = ["None provided"]
else:
sample_md_keys = table.metadata()[0].keys()
if table.metadata(axis='observation') is None:
observation_md_keys = ["None provided"]
else:
observation_md_keys = table.metadata(axis='observation')[0].keys()
num_samples = len(table.ids())
if observations:
# as this is a transpose of the original table...
lines.append('Num samples: ' + locale.format('%d', num_observations,
grouping=True))
lines.append('Num observations: ' + locale.format('%d', num_samples,
grouping=True))
else:
> lines.append('Num samples: ' + locale.format('%d', num_samples,
grouping=True))
E AttributeError: module 'locale' has no attribute 'format'.
Did you mean: '_format'?
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_summarizer.py:88:
AttributeError
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.15.2-1
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1056...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 19 Jun 2023 23:18:50 +0200
Source: python-biom-format
Architecture: source
Version: 2.1.15.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1056323
Changes:
python-biom-format (2.1.15.2-1) unstable; urgency=medium
.
* New upstream version
Closes: #1056323
* Standards-Version: 4.6.2 (routine-update)
* d/control: remove Breack+Replaces on obsolete package.
* d/control: add myself to uploaders.
* d/control: build depends on python3-nympydoc.
* Patches:
- ignore_local_dist-packages.patch: unfuzz.
- enable_sloppy_sphinx_build.patch: remove; applied upstream.
- fix_future_import.patch: refresh.
- sphinx.ext.pngmath.patch: remove; applied upstream.
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python-biom-format_2.1.15.2-1_amd64.buildinfo
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python-biom-format_2.1.15.2-1.dsc
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--- End Message ---
