Your message dated Mon, 21 Nov 2022 15:12:02 +0000
with message-id <e1ox8so-00fyok...@fasolo.debian.org>
and subject line Bug#1023222: fixed in python-xarray 2022.11.0-2
has caused the Debian Bug report #1023222,
regarding python-xarray: autopkgtest regression on s390x: segmentation fault
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1023222: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1023222
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-xarray
Version: 2022.10.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
With a recent upload of python-xarray the autopkgtest of python-xarray
fails in testing on s390x when that autopkgtest is run with the binary
packages of python-xarray from unstable. It passes when run with only
packages from testing. In tabular form:
pass fail
python-xarray from testing 2022.10.0-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=python-xarray
https://ci.debian.net/data/autopkgtest/testing/s390x/p/python-xarray/27672266/log.gz
[ 90%]
tests/test_sparse.py::test_variable_property[nbytes] PASSED
[ 90%]
tests/test_sparse.py::test_variable_property[ndim] PASSED
[ 90%]
tests/test_sparse.py::test_variable_property[values] XFAIL (Coercion...)
[ 90%]
tests/test_sparse.py::test_variable_method[obj.all(*(), **{})-False]
Fatal Python error: Segmentation fault
Current thread 0x000003ff91575040 (most recent call first):
File "/usr/lib/python3/dist-packages/sparse/_coo/core.py", line 1562
in _grouped_reduce
File "/usr/lib/python3/dist-packages/sparse/_coo/core.py", line 687
in _reduce_calc
File "/usr/lib/python3/dist-packages/sparse/_sparse_array.py", line
360 in reduce
File "/usr/lib/python3/dist-packages/sparse/_sparse_array.py", line
278 in _reduce
File "/usr/lib/python3/dist-packages/sparse/_sparse_array.py", line
307 in __array_ufunc__
File "/usr/lib/python3/dist-packages/sparse/_sparse_array.py", line
490 in all
File "/usr/lib/python3/dist-packages/sparse/_sparse_array.py", line
268 in __array_function__
File "<__array_function__ internals>", line 5 in all
File "/usr/lib/python3/dist-packages/xarray/core/variable.py", line
1901 in reduce
File "/usr/lib/python3/dist-packages/xarray/core/common.py", line 73
in wrapped_func
File "/usr/lib/python3/dist-packages/xarray/tests/test_sparse.py",
line 69 in __call__
File "/usr/lib/python3/dist-packages/xarray/tests/test_sparse.py",
line 231 in test_variable_method
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 192 in
pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1761 in
runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 166 in
pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 259 in
<lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 338 in
from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 258 in
call_runtest_hook
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 219 in
call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 130 in
runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 111 in
pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in
pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 322 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 268 in
wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 315 in
pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 39 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 80 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 265 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 164 in main
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 187 in console_main
File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 5 in
<module>
File "/usr/lib/python3.10/runpy.py", line 86 in _run_code
File "/usr/lib/python3.10/runpy.py", line 196 in _run_module_as_main
Extension modules: numpy.core._multiarray_umath,
numpy.core._multiarray_tests, numpy.linalg.lapack_lite,
numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal,
numpy.random._common, numpy.random.bit_generator,
numpy.random._bounded_integers, numpy.random._mt19937,
numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64,
numpy.random._sfc64, numpy.random._generator,
pandas._libs.tslibs.dtypes, pandas._libs.tslibs.base,
pandas._libs.tslibs.np_datetime, pandas._libs.tslibs.nattype,
pandas._libs.tslibs.timezones, pandas._libs.tslibs.ccalendar,
pandas._libs.tslibs.tzconversion, pandas._libs.tslibs.strptime,
pandas._libs.tslibs.fields, pandas._libs.tslibs.timedeltas,
pandas._libs.tslibs.timestamps, pandas._libs.properties,
pandas._libs.tslibs.offsets, pandas._libs.tslibs.parsing,
pandas._libs.tslibs.conversion, pandas._libs.tslibs.period,
pandas._libs.tslibs.vectorized, pandas._libs.ops_dispatch,
pandas._libs.missing, pandas._libs.hashtable, pandas._libs.algos,
pandas._libs.interval, pandas._libs.tslib, pandas._libs.lib,
pandas._libs.hashing, pandas._libs.ops, bottleneck.reduce,
bottleneck.nonreduce, bottleneck.nonreduce_axis, bottleneck.move,
pandas._libs.arrays, pandas._libs.index, pandas._libs.join,
pandas._libs.sparse, pandas._libs.reduction, pandas._libs.indexing,
pandas._libs.internals, pandas._libs.writers,
pandas._libs.window.aggregations, pandas._libs.window.indexers,
pandas._libs.reshape, pandas._libs.groupby, pandas._libs.parsers,
pandas._libs.json, pandas._libs.testing, yaml._yaml,
markupsafe._speedups, lz4._version, lz4.frame._frame,
numba.core.typeconv._typeconv, numba._helperlib, numba._dynfunc,
numba._dispatcher, numba.core.runtime._nrt_python,
numba.np.ufunc._internal, numba.experimental.jitclass._box,
scipy._lib._ccallback_c, scipy.sparse._sparsetools,
scipy.sparse._csparsetools, scipy.sparse.csgraph._tools,
scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal,
scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow,
scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering,
scipy._lib._uarray._uarray, scipy.special._ufuncs_cxx,
scipy.special._ufuncs, scipy.special._specfun, scipy.linalg._fblas,
scipy.linalg._flapack, scipy.linalg._cythonized_array_utils,
scipy.linalg._flinalg, scipy.linalg._solve_toeplitz,
scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas,
scipy.linalg.cython_lapack, scipy.linalg._decomp_update,
scipy.special._comb, scipy.special._ellip_harm_2,
scipy.fftpack.convolve, cftime._cftime, netCDF4._netCDF4,
scipy.io.matlab._mio_utils, scipy.io.matlab._streams,
scipy.io.matlab._mio5_utils, matplotlib._c_internal_utils, PIL._imaging,
matplotlib._path, kiwisolver, rasterio._version, rasterio._err,
rasterio._filepath, rasterio._env, rasterio._transform, rasterio._base,
rasterio.crs, rasterio._features, rasterio._warp, rasterio._io,
matplotlib._image, scipy.interpolate._fitpack,
scipy.interpolate.dfitpack, scipy.interpolate._bspl,
scipy.interpolate._ppoly, scipy.spatial._ckdtree,
scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi,
scipy.spatial._distance_wrap, scipy.spatial._hausdorff,
scipy.spatial.transform._rotation, scipy.interpolate.interpnd,
scipy.interpolate._rbfinterp_pythran,
scipy.sparse.linalg._isolve._iterative,
scipy.sparse.linalg._dsolve._superlu,
scipy.sparse.linalg._eigen.arpack._arpack, scipy.optimize._minpack2,
scipy.optimize._group_columns, scipy.optimize._trlib._trlib,
scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC,
scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack,
scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros,
scipy.optimize.__nnls, scipy.optimize._highs.cython.src._highs_wrapper,
scipy.optimize._highs._highs_wrapper,
scipy.optimize._highs.cython.src._highs_constants,
scipy.optimize._highs._highs_constants, scipy.linalg._interpolative,
scipy.optimize._bglu_dense, scipy.optimize._lsap_module,
scipy.integrate._odepack, scipy.integrate._quadpack,
scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda
(total: 156)
bash: line 1: 6460 Segmentation fault $py -m pytest -v --pyargs xarray
autopkgtest [16:26:52]: test command1
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: python-xarray
Source-Version: 2022.11.0-2
Done: Alastair McKinstry <mckins...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-xarray, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1023...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated python-xarray
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 21 Nov 2022 14:37:38 +0000
Source: python-xarray
Architecture: source
Version: 2022.11.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Closes: 1004869 1022255 1023222
Changes:
python-xarray (2022.11.0-2) unstable; urgency=medium
.
* Ack bogs fixed in this and previous releases:
Closes: #1022255, #1004869, #1023222
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